NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ208
Library CH
(Link to library)
Clone ID CHQ208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHQ208P
(Link to Original site)
Representative DNA sequence 
>CHQ208 (CHQ208Q) /CSM/CH/CHQ2-A/CHQ208Q.Seq.d/
TCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAATTTTTTTGTATA
TAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCACACACATACATA
TAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGATTTAGGTACAAC
ATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCAAATGATCAAGG
TAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTAATTGGTGATGC
TGCAAANAATCAAGTTGCAATGAATCCAACCAATACNGTATTTGATGCTAAACGTTTAAT
TGGTCGTAAATTTANTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAAAGT
TATTCCAAAGGATGGTGATANGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAAAXX
XXXXXXXXTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATG
ACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGA
GGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGNCTN
CTCATATATAG
sequence update 2002.10.25
Translated Amino Acid sequence 
qfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGIDLGTT
YSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAXNQVAMNPTNTVFDAKRLI
GRKFXDKEVQSDMKHWPFKVIPKDGDXPHIQVEFKGETK---

---DNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVS
AEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTV
KNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSK
LYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*xl
liy
Translated Amino Acid sequence (All Frames) 
Frame A:
si*fiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknvinwy*fryn
ifmcwclak*sc*nyck*sr**nhsilcciy*yrtfnw*cckxsscnesnqyxi*c*tfn
ws*ix*qrssk*yetlaiqsyskgw*xatyss*iqr*n*---

---**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkci
s*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcihc
*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrsscqsnhe*
tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknnklvksikx
xhi*

Frame B:
qfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGIDLGTT
YSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAXNQVAMNPTNTVFDAKRLI
GRKFXDKEVQSDMKHWPFKVIPKDGDXPHIQVEFKGETK---

---DNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNVS
AEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTV
KNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSK
LYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kiis**nq*xl
liy

Frame C:
nliynnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkchqlvli*vqh
ihvlvfgkmivlkllqmikvieplhlmlhlliqnv*lvmlqxiklq*iqpixylmlnv*l
vvnlxtkkfkvi*nighsklfqrmvixhifklnskvkl---

---iinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*myq
lkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsll
kiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kqlsiqs*vn
sikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinkxx
syi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ208 (CHQ208Q) /CSM/CH/CHQ2-A/CHQ208Q.Seq.d/                       2103   0.0
CHL528 (CHL528Q) /CSM/CH/CHL5-B/CHL528Q.Seq.d/                       1421   0.0
VHK677 (VHK677Q) /CSM/VH/VHK6-D/VHK677Q.Seq.d/                       1415   0.0
CHL217 (CHL217Q) /CSM/CH/CHL2-A/CHL217Q.Seq.d/                       1415   0.0
CHF309 (CHF309Q) /CSM/CH/CHF3-A/CHF309Q.Seq.d/                       1415   0.0
VHP873 (VHP873Q) /CSM/VH/VHP8-D/VHP873Q.Seq.d/                       1413   0.0
VHO655 (VHO655Q) /CSM/VH/VHO6-C/VHO655Q.Seq.d/                       1413   0.0
VHO461 (VHO461Q) /CSM/VH/VHO4-C/VHO461Q.Seq.d/                       1413   0.0
VHK415 (VHK415Q) /CSM/VH/VHK4-A/VHK415Q.Seq.d/                       1413   0.0
VHI336 (VHI336Q) /CSM/VH/VHI3-B/VHI336Q.Seq.d/                       1413   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1403   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1396   0.0    1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   248   e-105  7
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   248   2e-95  11
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.   139   8e-95  9
AY954892|AY954892.1 Cryptosporidium andersoni strain HenanZhzhca heat shock protein 70 gene, partial cds.   123   2e-86  8
DQ060426|DQ060426.1 Cryptosporidium andersoni strain zzca heat shock protein 70-like gene, partial sequence.   121   3e-84  7
AY954894|AY954894.1 Cryptosporidium andersoni strain bjcm heat shock protein 70 gene, partial cds.   117   5e-84  8
AY954893|AY954893.1 Cryptosporidium andersoni strain changchunca heat shock protein 70 gene, partial cds.   123   2e-83  8
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          133   5e-83  6
dna update 2005.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   352   1e-95
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   352   1e-95
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   257   5e-67
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   257   6e-67
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   256   1e-66
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   256   1e-66
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   255   2e-66
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   255   2e-66
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK...   255   2e-66
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   255   2e-66
protein update 2009. 4.11
PSORT 

 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHQ208 is cyt
5' end seq. ID CHQ208F
5' end seq. 
>CHQ208F.Seq
TCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAATTTTTTTGTATA
TAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCACACACATACATA
TAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGATTTAGGTACAAC
ATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCAAATGATCAAGG
TAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTAATTGGTGATGC
TGCAAANAATCAAGTTGCAATGAATCCAACCAATACNGTATTTGATGCTAAACGTTTAAT
TGGTCGTAAATTTANTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAAAGT
TATTCCAAAGGATGGTGATANGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAAANN
NNNNNNNN
Length of 5' end seq. 488
3' end seq. ID CHQ208Z
3' end seq. 
>CHQ208Z.Seq
NNNNNNNNNNTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTA
TGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAA
GAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTAT
CAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTC
GTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAG
ATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTG
TTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAA
CTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAA
AGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTA
AACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATG
ATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGG
AAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGNC
TNCTCATATATAG
Length of 3' end seq. 733
Connected seq. ID CHQ208P
Connected seq. 
>CHQ208P.Seq
TCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAATTTTTTTGTATA
TAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCACACACATACATA
TAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGATTTAGGTACAAC
ATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCAAATGATCAAGG
TAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAACGTTTAATTGGTGATGC
TGCAAANAATCAAGTTGCAATGAATCCAACCAATACNGTATTTGATGCTAAACGTTTAAT
TGGTCGTAAATTTANTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAAAGT
TATTCCAAAGGATGGTGATANGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAAA--
--------TGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATG
ACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGA
GGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGNCTN
CTCATATATAG
Length of connected seq. 1201
Full length Seq ID -
Full length Seq. -
Length of full length seq. -