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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ206
Library CH
(Link to library)
Clone ID CHQ206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16298-1|Contig-U16523-1
Original site URL
Representative seq. ID CHQ206P
(Link to Original site)
Representative DNA sequence 
>CHQ206 (CHQ206Q) /CSM/CH/CHQ2-A/CHQ206Q.Seq.d/
AACAATATAAATTTTTTAAATACCTATTTATCTTTTAAACAAATACATAATATTTTCATT
AATTAATATTTTAATATTTCCAAATTAAAATGATCCCAAAAAAACAAAAAGGATTCAATG
GTGAACCAAAATCTCATCAAGAAATTGATAGAAGTCAATCACCATTGAAACAAAGAACCA
ATAATAATAATTATCAACAACAACCACCGCAACAACAACAAAAACAACAACCACAACAAC
CACAACAAAAAAAACAACAACAAAAACAACAACAAAAACAACAACCACAACAACCACAAC
AACCACAACAACCACAACAACAAAAACAACAACTACAACAACCACAACAACCACAACAAT
ATTTCCAACCAAGACAAACTCAAAATGCTTGGGGAAAACAAAATAACAGTATCCCACTTG
AAGAACAATTTCAAGAAGTAAAACCAATCACACAACCTCAAACACCTGAAACAACAACAA
CAACXXXXXXXXXXCTCAATCAACAAATATTCAATGGTGTCATTCCAAAGAAAACAATGA
TCATTGGTATCGATGTTGGTCATAACTCTGATATGAGAGGTCATTCAGTAGTTGGATTCG
TTGCAACTATCGATGATAAATTTCAAAAGTATTTCTCAAGATCTTTTGTTCAAAAGCGTC
CTGGTAAAGAAATCATTGATTCTCTTGAAGAAGCAACTAAAGAAGCAATGTCAAAATATT
TTAGTTTCAATAATTGTTTACCAGAATTGGTTATAGTTTATCGTGATGGTGTTGGTGATG
GTATGTTAGATCTTGTCAATAGATCTGAAATTGCTGCAATGAAAAAAGGTTTTGCTGAAA
CACCATCTTCTTGGGGTATAAAACCAAAGTTAATGTATGTCATTGTCAAAAAGAATACAA
ATGCACGTTTATTTACTGCTGATCCAATTGGTAATCCTCCAGCTGGTACTTTGGTTGACT
CAAAAATTACCCATCCAAATTGGTATGATTTCTTTTTAGTCTCTCAAGTAACTAACAATG
GTTCTGTCAATCCAACTCATTATCACGTTTTATTGGATGAACAAAAAATGCCTGCTGATT
TATTTCAATTATTTACTTTCCAAATGTGTCATCTTTATTTCAACTTTGAAAAATCTGTTC
GTGTTCCAGCAACTTGTCAATTTGCACACAAAATGGCATTTTTAATTGGTAGAACAGTTT
TCGCTGATGCTGCGCCTCAATTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
qykffkylfif*tnt*yfh*lif*YFQIKMIPKKQKGFNGEPKSHQEIDRSQSPLKQRTN
NNNYQQQPPQQQQKQQPQQPQQKKQQQKQQQKQQPQQPQQPQQPQQQKQQLQQPQQPQQY
FQPRQTQNAWGKQNNSIPLEEQFQEVKPITQPQTPETTTT---

---LNQQIFNGVIPKKTMIIGIDVGHNSDMRGHSVVGFVATIDDKFQKYFSRSFVQKRPG
KEIIDSLEEATKEAMSKYFSFNNCLPELVIVYRDGVGDGMLDLVNRSEIAAMKKGFAETP
SSWGIKPKLMYVIVKKNTNARLFTADPIGNPPAGTLVDSKITHPNWYDFFLVSQVTNNGS
VNPTHYHVLLDEQKMPADLFQLFTFQMCHLYFNFEKSVRVPATCQFAHKMAFLIGRTVFA
DAAPQL
Translated Amino Acid sequence (All Frames) 
Frame A:
nninflntylsfkqihnifin*yfnisklk*sqknkkdsmvnqnlikklievnhh*nkep
iiiiinnnhrnnnknnnhnnhnkknnnknnnknnnhnnhnnhnnhnnknnnynnhnnhnn
isnqdklkmlgenkitvshlknnfkk*nqshnlkhlkqqqq---

---LNQQIFNGVIPKKTMIIGIDVGHNSDMRGHSVVGFVATIDDKFQKYFSRSFVQKRPG
KEIIDSLEEATKEAMSKYFSFNNCLPELVIVYRDGVGDGMLDLVNRSEIAAMKKGFAETP
SSWGIKPKLMYVIVKKNTNARLFTADPIGNPPAGTLVDSKITHPNWYDFFLVSQVTNNGS
VNPTHYHVLLDEQKMPADLFQLFTFQMCHLYFNFEKSVRVPATCQFAHKMAFLIGRTVFA
DAAPQL

Frame B:
ti*if*ipiyllnkyiifslinilifpn*ndpkktkriqw*tkissrn**ksitietknq
***lsttttatttkttttttttkktttktttktttttttttttttttkttttttttttti
fptktnskclgktk*qypt*rtisrsktnhttsnt*nnnnn---

---sinkysmvsfqrkq*slvsmlvitli*eviq*ldslqlsminfksisqdllfksvlv
kkslillkkqlkkqcqnilvsiivyqnwl*fivmvlvmvc*ilsidlkllq*kkvllkhh
llgv*nqs*cmslskriqmhvyllliqlvilqlvlwltqklpiqigmisf*slk*ltmvl
siqliitfywmnkkclliyfnyllskcvifistlknlfvfqqlvnlhtkwhf*lveqfsl
mlrlny

Frame C:
qykffkylfif*tnt*yfh*lif*YFQIKMIPKKQKGFNGEPKSHQEIDRSQSPLKQRTN
NNNYQQQPPQQQQKQQPQQPQQKKQQQKQQQKQQPQQPQQPQQPQQQKQQLQQPQQPQQY
FQPRQTQNAWGKQNNSIPLEEQFQEVKPITQPQTPETTTT---

---qstniqwchskenndhwyrcws*l*yersfsswircnyr**iskvflkifcskasw*
rnh*fs*rsn*rsnvkif*fq*lftrigysls*wcw*wyvrscq*i*nccnekrfc*nti
flgyktkvnvchcqkeykctfiyc*snw*ssswyfg*lknypsklv*flfslssn*qwfc
qsnslsrfig*tknac*fisiiyfpnvsslfql*kicscssnlsictqngifnw*nsfr*
ccasi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ206 (CHQ206Q) /CSM/CH/CHQ2-A/CHQ206Q.Seq.d/                       1608   0.0
SHL722 (SHL722Q) /CSM/SH/SHL7-A/SHL722Q.Seq.d/                       1447   0.0
SHL306 (SHL306Q) /CSM/SH/SHL3-A/SHL306Q.Seq.d/                       1447   0.0
SHK742 (SHK742Q) /CSM/SH/SHK7-B/SHK742Q.Seq.d/                       1447   0.0
CHS352 (CHS352Q) /CSM/CH/CHS3-C/CHS352Q.Seq.d/                       1447   0.0
CHS347 (CHS347Q) /CSM/CH/CHS3-B/CHS347Q.Seq.d/                       1447   0.0
CHQ550 (CHQ550Q) /CSM/CH/CHQ5-C/CHQ550Q.Seq.d/                       1447   0.0
CHL541 (CHL541Q) /CSM/CH/CHL5-B/CHL541Q.Seq.d/                       1447   0.0
CHL307 (CHL307Q) /CSM/CH/CHL3-A/CHL307Q.Seq.d/                       1447   0.0
CHL237 (CHL237Q) /CSM/CH/CHL2-B/CHL237Q.Seq.d/                       1447   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.   283   e-161  5
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    54   3e-17  9
AC069535|AC069535.15 Mus musculus chromosome 7 clone RP23-453F14, WORKING DRAFT SEQUENCE, 5 unordered pieces.    48   0.001  4
AC098920|AC098920.6 Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   0.001  5
AC026767|AC026767.30 Mus musculus 7 BAC RP23-328L8 (Roswell Park Cancer Institute Mouse BAC) complete sequence.    48   0.002  5
AC133735|AC133735.2 Rattus norvegicus clone CH230-162F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   0.006  4
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    36   0.009  8
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   0.012  10
AC084016|AC084016.12 Homo sapiens 3 BAC RP11-190F16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36   0.018  2
AC068350|AC068350.2 Homo sapiens chromosome 3 clone RP11-81K20 map 3, WORKING DRAFT SEQUENCE, 6 unordered pieces.    36   0.018  2
dna update 2005.11. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116924_18(AC116924|pid:none) Dictyostelium discoideum chromoso...   401   e-110
AB455103_1(AB455103|pid:none) Botryllus primigenus BpPiwi mRNA f...   200   7e-50
EF619343_1(EF619343|pid:none) Gallus gallus piwi-like 1 (PIWI) m...   199   2e-49
EU413991_1(EU413991|pid:none) Oryzias latipes piwi-like protein ...   199   2e-49
AY493987_1(AY493987|pid:none) Podocoryne carnea Cniwi (Cniwi) mR...   194   5e-48
AB372007_1(AB372007|pid:none) Bombyx mori BmAGO3 mRNA for AGO3, ...   190   7e-47
(Q9JMB7) RecName: Full=Piwi-like protein 1;  &AB032604_1(AB03260...   187   5e-46
AF104260_1(AF104260|pid:none) Homo sapiens HIWI mRNA, complete c...   186   1e-45
CT030247_6(CT030247|pid:none) Mouse DNA sequence from clone RP23...   186   1e-45
BC028581_1(BC028581|pid:none) Homo sapiens piwi-like 1 (Drosophi...   186   1e-45
protein update 2009. 4.11
PSORT 

 psg: 0.54  gvh: 0.01  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHQ206 is nuc
5' end seq. ID CHQ206F
5' end seq. 
>CHQ206F.Seq
AACAATATAAATTTTTTAAATACCTATTTATCTTTTAAACAAATACATAATATTTTCATT
AATTAATATTTTAATATTTCCAAATTAAAATGATCCCAAAAAAACAAAAAGGATTCAATG
GTGAACCAAAATCTCATCAAGAAATTGATAGAAGTCAATCACCATTGAAACAAAGAACCA
ATAATAATAATTATCAACAACAACCACCGCAACAACAACAAAAACAACAACCACAACAAC
CACAACAAAAAAAACAACAACAAAAACAACAACAAAAACAACAACCACAACAACCACAAC
AACCACAACAACCACAACAACAAAAACAACAACTACAACAACCACAACAACCACAACAAT
ATTTCCAACCAAGACAAACTCAAAATGCTTGGGGAAAACAAAATAACAGTATCCCACTTG
AAGAACAATTTCAAGAAGTAAAACCAATCACACAACCTCAAACACCTGAAACAACAACAA
CAACNNNNNNNNNN
Length of 5' end seq. 494
3' end seq. ID CHQ206Z
3' end seq. 
>CHQ206Z.Seq
NNNNNNNNNNCTCAATCAACAAATATTCAATGGTGTCATTCCAAAGAAAACAATGATCAT
TGGTATCGATGTTGGTCATAACTCTGATATGAGAGGTCATTCAGTAGTTGGATTCGTTGC
AACTATCGATGATAAATTTCAAAAGTATTTCTCAAGATCTTTTGTTCAAAAGCGTCCTGG
TAAAGAAATCATTGATTCTCTTGAAGAAGCAACTAAAGAAGCAATGTCAAAATATTTTAG
TTTCAATAATTGTTTACCAGAATTGGTTATAGTTTATCGTGATGGTGTTGGTGATGGTAT
GTTAGATCTTGTCAATAGATCTGAAATTGCTGCAATGAAAAAAGGTTTTGCTGAAACACC
ATCTTCTTGGGGTATAAAACCAAAGTTAATGTATGTCATTGTCAAAAAGAATACAAATGC
ACGTTTATTTACTGCTGATCCAATTGGTAATCCTCCAGCTGGTACTTTGGTTGACTCAAA
AATTACCCATCCAAATTGGTATGATTTCTTTTTAGTCTCTCAAGTAACTAACAATGGTTC
TGTCAATCCAACTCATTATCACGTTTTATTGGATGAACAAAAAATGCCTGCTGATTTATT
TCAATTATTTACTTTCCAAATGTGTCATCTTTATTTCAACTTTGAAAAATCTGTTCGTGT
TCCAGCAACTTGTCAATTTGCACACAAAATGGCATTTTTAATTGGTAGAACAGTTTTCGC
TGATGCTGCGCCTCAATTAT
Length of 3' end seq. 740
Connected seq. ID CHQ206P
Connected seq. 
>CHQ206P.Seq
AACAATATAAATTTTTTAAATACCTATTTATCTTTTAAACAAATACATAATATTTTCATT
AATTAATATTTTAATATTTCCAAATTAAAATGATCCCAAAAAAACAAAAAGGATTCAATG
GTGAACCAAAATCTCATCAAGAAATTGATAGAAGTCAATCACCATTGAAACAAAGAACCA
ATAATAATAATTATCAACAACAACCACCGCAACAACAACAAAAACAACAACCACAACAAC
CACAACAAAAAAAACAACAACAAAAACAACAACAAAAACAACAACCACAACAACCACAAC
AACCACAACAACCACAACAACAAAAACAACAACTACAACAACCACAACAACCACAACAAT
ATTTCCAACCAAGACAAACTCAAAATGCTTGGGGAAAACAAAATAACAGTATCCCACTTG
AAGAACAATTTCAAGAAGTAAAACCAATCACACAACCTCAAACACCTGAAACAACAACAA
CAAC----------CTCAATCAACAAATATTCAATGGTGTCATTCCAAAGAAAACAATGA
TCATTGGTATCGATGTTGGTCATAACTCTGATATGAGAGGTCATTCAGTAGTTGGATTCG
TTGCAACTATCGATGATAAATTTCAAAAGTATTTCTCAAGATCTTTTGTTCAAAAGCGTC
CTGGTAAAGAAATCATTGATTCTCTTGAAGAAGCAACTAAAGAAGCAATGTCAAAATATT
TTAGTTTCAATAATTGTTTACCAGAATTGGTTATAGTTTATCGTGATGGTGTTGGTGATG
GTATGTTAGATCTTGTCAATAGATCTGAAATTGCTGCAATGAAAAAAGGTTTTGCTGAAA
CACCATCTTCTTGGGGTATAAAACCAAAGTTAATGTATGTCATTGTCAAAAAGAATACAA
ATGCACGTTTATTTACTGCTGATCCAATTGGTAATCCTCCAGCTGGTACTTTGGTTGACT
CAAAAATTACCCATCCAAATTGGTATGATTTCTTTTTAGTCTCTCAAGTAACTAACAATG
GTTCTGTCAATCCAACTCATTATCACGTTTTATTGGATGAACAAAAAATGCCTGCTGATT
TATTTCAATTATTTACTTTCCAAATGTGTCATCTTTATTTCAACTTTGAAAAATCTGTTC
GTGTTCCAGCAACTTGTCAATTTGCACACAAAATGGCATTTTTAATTGGTAGAACAGTTT
TCGCTGATGCTGCGCCTCAATTAT
Length of connected seq. 1214
Full length Seq ID -
Full length Seq. -
Length of full length seq. -