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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ203
Library CH
(Link to library)
Clone ID CHQ203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHQ203P
(Link to Original site)
Representative DNA sequence 
>CHQ203 (CHQ203Q) /CSM/CH/CHQ2-A/CHQ203Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XCAAGATGCCATTGAACAAGCTCNNCATTTACAACGTATTGANAATGGTGAAGATATCGA
TGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGANCAAGATGCTGN
TAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGANCA
ATTTTCNGAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAG
GACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTA
TCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATG
CTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAA
ATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACC
AAATTAAAAATCAANTAAAAAATAT
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QDAIEQAXHLQRIXNGEDIDEYEAAQHEVAFLDENXQDAXKLQNEMDQLELLLEENE
EXQFSE*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstr
ercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksxkky
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---QDAIEQAXHLQRIXNGEDIDEYEAAQHEVAFLDENXQDAXKLQNEMDQLELLLEENE
EXQFSE*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstr
ercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksxkky

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---kmplnklxiynvlxmvkismsmklpnmklpf*mkmxkmlxnykmkwtn*nsylkrmk
kxnfxnknlqqlnenenqqqqqgqqqvqatnveqqiveqlkvikefqrqdqqkkqkiqqe
ndavylsdvekaqleldaelaknnkqenqdenlvqekqqspdqiknqxkn

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---rch*tssxftty*xw*ryr*v*scpt*sclfr*k*xrcx*itk*ngpirtlt*re*r
rxifxikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkr
tmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkix*ki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL874 (CHL874Q) /CSM/CH/CHL8-D/CHL874Q.Seq.d/                        444   e-124
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        444   e-124
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        444   e-124
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        444   e-124
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        444   e-124
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        444   e-124
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        444   e-124
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        444   e-124
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        444   e-124
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        444   e-124
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   444   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   100   7e-17  1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.22   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.22   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.22   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.22   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.22   1
CA966907|CA966907.2 CcLL10a35e10f1 Carp liver library 5 Cyprinus carpio cDNA clone 35e10 5' similar to zgc.nt BC059805, mRNA sequence.    48   0.22   1
AX641671|AX641671.1 Sequence 2861 from Patent WO0101118.           34   0.77   5
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12 section 6 of 9 of the complete sequence.    38   0.84   5
dna update 2005.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   115   1e-24
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           36   0.96
AE016819_111(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   4.8
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   6.3
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   6.3
AY059831_1(AY059831|pid:none) Arabidopsis thaliana Unknown prote...    33   6.3
protein update 2009. 4.11
PSORT 

 psg: 0.46  gvh: 0.27  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHQ203 is nuc
5' end seq. ID CHQ203F
5' end seq. 
>CHQ203F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHQ203Z
3' end seq. 
>CHQ203Z.Seq
NNNNNNNNNNCAAGATGCCATTGAACAAGCTCNNCATTTACAACGTATTGANAATGGTGA
AGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGANCA
AGATGCTGNTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGA
AGAAGANCAATTTTCNGAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAAC
AACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAAC
TTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAG
AGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAAT
TGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAAT
CTCCTGACCAAATTAAAAATCAANTAAAAAATAT
Length of 3' end seq. 514
Connected seq. ID CHQ203P
Connected seq. 
>CHQ203P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-CAAGATGCCATTGAACAAGCTCNNCATTTACAACGTATTGANAATGGTGAAGATATCGA
TGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGANCAAGATGCTGN
TAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGANCA
ATTTTCNGAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAG
GACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTA
TCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATG
CTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAA
ATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACC
AAATTAAAAATCAANTAAAAAATAT
Length of connected seq. 615
Full length Seq ID -
Full length Seq. -
Length of full length seq. -