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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ194
Library CH
(Link to library)
Clone ID CHQ194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHQ194P
(Link to Original site)
Representative DNA sequence 
>CHQ194 (CHQ194Q) /CSM/CH/CHQ1-D/CHQ194Q.Seq.d/
ATTGTTAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAG
ATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTA
ATTCACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGT
ATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATT
ATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAA
CGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTT
GATGCTAAACGTTTAATTGGTCGTAAATTTAGTGAXXXXXXXXXXCTNTGATAATCAACC
AGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATT
GGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGT
TACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGG
TAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGA
AAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGT
TGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGA
AAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAG
TGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGAT
GAAAGCNTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTAT
GCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAA
CAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCNAATAGAT
TTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTGCTCATA
sequence update 2002.10.25
Translated Amino Acid sequence 
ivnsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIG
IDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF
DAKRLIGRKFS---

---XDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNV
SAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFT
VKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMS
KLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisix*is*kiis**nq*s
lli
Translated Amino Acid sequence (All Frames) 
Frame A:
ivnsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIG
IDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF
DAKRLIGRKFS---

---l**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*ckwylkc
is*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*igklcih
c*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*desxrsscqsnhe
*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyxidflknnklvksik
lah

Frame B:
lliq*fnliynnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkchqlv
li*vqhihvlvfgkmivlkllqmikvieplhlmlhlliqnv*lvmlqriklq*iqpiqyl
mlnv*lvvnlv---

---XDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVDANGILNV
SAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFT
VKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMS
KLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisix*is*kiis**nq*s
lli

Frame C:
c*fsssi*fiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknvinwy
*frynifmcwclak*sc*nyck*sr**nhsilcciy*yrtfnw*cckesscnesnqysi*
c*tfnws*i**---

---xiinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlmqmvs*my
qlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrinwkimhsl
lkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kx*kqlsiqs*v
nsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**vskinka
cs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ194 (CHQ194Q) /CSM/CH/CHQ1-D/CHQ194Q.Seq.d/                       1919   0.0
VHI336 (VHI336Q) /CSM/VH/VHI3-B/VHI336Q.Seq.d/                       1411   0.0
AFO615 (AFO615Q) /CSM/AF/AFO6-A/AFO615Q.Seq.d/                       1411   0.0
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/                       1405   0.0
VHP873 (VHP873Q) /CSM/VH/VHP8-D/VHP873Q.Seq.d/                       1405   0.0
VHO655 (VHO655Q) /CSM/VH/VHO6-C/VHO655Q.Seq.d/                       1405   0.0
VHO461 (VHO461Q) /CSM/VH/VHO4-C/VHO461Q.Seq.d/                       1405   0.0
VHK415 (VHK415Q) /CSM/VH/VHK4-A/VHK415Q.Seq.d/                       1405   0.0
VHE322 (VHE322Q) /CSM/VH/VHE3-A/VHE322Q.Seq.d/                       1405   0.0
VHD618 (VHD618Q) /CSM/VH/VHD6-A/VHD618Q.Seq.d/                       1405   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1398   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1390   0.0    1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   252   4e-90  5
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.   145   3e-88  8
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   252   4e-82  10
AY954892|AY954892.1 Cryptosporidium andersoni strain HenanZhzhca heat shock protein 70 gene, partial cds.   123   3e-80  8
AY954893|AY954893.1 Cryptosporidium andersoni strain changchunca heat shock protein 70 gene, partial cds.   129   4e-79  8
DQ060426|DQ060426.1 Cryptosporidium andersoni strain zzca heat shock protein 70-like gene, partial sequence.   127   4e-78  7
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          133   6e-78  5
AY954894|AY954894.1 Cryptosporidium andersoni strain bjcm heat shock protein 70 gene, partial cds.   117   6e-78  8
dna update 2005.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   352   1e-95
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   352   1e-95
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   257   4e-67
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   257   6e-67
EF506932_1(EF506932|pid:none) Fasciola hepatica heat shock prote...   256   1e-66
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   256   1e-66
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   255   2e-66
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   255   2e-66
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK...   255   2e-66
EF506931_1(EF506931|pid:none) Fasciola gigantica heat shock prot...   255   2e-66
protein update 2009. 4.11
PSORT 

 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHQ194 is cyt
5' end seq. ID CHQ194F
5' end seq. 
>CHQ194F.Seq
ATTGTTAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAG
ATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTA
ATTCACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGT
ATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATT
ATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAA
CGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTT
GATGCTAAACGTTTAATTGGTCGTAAATTTAGTGANNNNNNNNNN
Length of 5' end seq. 405
3' end seq. ID CHQ194Z
3' end seq. 
>CHQ194Z.Seq
NNNNNNNNNNCTNTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTG
CTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCAC
CAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATG
TATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAG
GTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAAC
AAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCA
CTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAAT
CAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAG
AAAAGGATGAATATGAAGATAAGATGAAAGCNTTAGAAGCAGTTGTCAATCCAATCATGA
GTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAA
ATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAG
AGGAAAACATCTCTATCNAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAA
GCTTGCTCATA
Length of 3' end seq. 731
Connected seq. ID CHQ194P
Connected seq. 
>CHQ194P.Seq
ATTGTTAATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAG
ATTAATTTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTA
ATTCACACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGT
ATTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATT
ATTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAA
CGTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTT
GATGCTAAACGTTTAATTGGTCGTAAATTTAGTGA----------CTNTGATAATCAACC
AGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATT
GGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGT
TACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGG
TAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGA
AAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGT
TGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGA
AAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAG
TGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGAT
GAAAGCNTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTAT
GCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAA
CAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCNAATAGAT
TTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTGCTCATA
Length of connected seq. 1116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -