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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ193
Library CH
(Link to library)
Clone ID CHQ193
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11363-1
Original site URL
Representative seq. ID CHQ193P
(Link to Original site)
Representative DNA sequence 
>CHQ193 (CHQ193Q) /CSM/CH/CHQ1-D/CHQ193Q.Seq.d/
ATCGGTAGTGATGGATTATTAAATCAACTCATTGAATCGATAACAATGAAAAGAATCATA
CAATATTAAAATATGATTTCAAAATTGATACAAAAAATATAATTGGTAAAAATATAATTA
TTACAGGTCAATCAGGTATTATTTTAGAAATCTTAAAATGGTTAATTAAATATTCACCTC
CAACAGAATCATTTGAAAACATTATCATTTTATCAAAATCATCATTAAAATGGGAGTTAG
AACTATTAATCAATAAAACAATATCAAGAAAGGATAATAACACCAAGTTCCATTTCAAGA
TCGTAGATGTTGGTGATTCAATTGAAATGAGAAAATCAATTAATCAAATTTTATTAGAAA
ATCCAAATATTGATAACATTGATTCAATATTCCATTACGCGTTCACTCAAGTAACTAXXX
XXXXXXXCAATTGAAAATATTAATAATTTACCAGGTGGTTATATGAAAAGTAAAGTAGTT
GTTGAAAATTTATTTAGAGAAGCAGCAAAAAGAGGTATTCCATCAATGTTAATTAGACTA
CCAATTATATTTTCACATGAAGAAACAGGTATTGGTCATGATTCTGATTTCTTCCAACTA
ATTATTCAATCATGTTATGCAGTTAAAAAGTATCCAAATATTGATAAAAACATATTAACA
TCACCAATTGGTTGGATAGGTTTAAATACAATTAAAATGATTGGAAATGAAAAATGTTGG
AATAAATCATCTTCAAATCAATTAAATATCTATAGTTTAAATAGTGAAGTTTCATCAATT
AAATCATCATTCTCATTCTTGGAAAAGCAATATGGATGTGAAATGGTTGAATATGAACAA
TGGAAGAATATCATTAATCAATCAAAGATTCTATCATGTATAAAGTTCAAAACATTCCAT
TCATTAGATAGACTCAATGGTGTTTATAACTTGGGTCATGGATTTGGTGTTTCAAAGAAA
ACTAAAGAATTATTACAATCAATGAACTCATATGAAGGAGGAAGGGTTAATGAAAAAATC
ATTCAAAATCATATAAACTATATCTTTAAAAATTAAATAATAAATTCTTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
r**wiiksth*IDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPP
TESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLEN
PNIDNIDSIFHYAFTQVT---

---IENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQL
IIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSI
KSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKK
TKELLQSMNSYEGGRVNEKIIQNHINYIFKN*iinslk
Translated Amino Acid sequence (All Frames) 
Frame A:
igsdgllnqliesitmkriiqy*nmiskliqki*lvki*llqvnqvlf*ks*ng*lnihl
qqnhlktlsfyqnhh*ngs*ny*sikqyqeriitpssisrs*mlviqlk*enqlikfy*k
iqilitliqysitrslk*l---

---qlkiliiyqvvi*kvk*llkiylekqqkevfhqc*ldyqlyfhmkkqvlvmilissn
*lfnhvmqlksiqilikty*hhqlvg*v*iqlk*lemknvginhlqin*isiv*ivkfhq
lnhhshswksnmdvkwlnmnngrislinqrfyhv*sskhsih*idsmvfitwvmdlvfqr
klknyynq*thmkeeglmkksfkii*tislkik**il*

Frame B:
svvmdy*inslnr*q*kesyniki*fqn*ykkynw*kynyyrsiryyfrnlkmvn*ifts
nrii*khyhfikiiikmgvrtinq*nnikkg**hqvpfqdrrcw*fn*nekin*snfirk
sky**h*fniplrvhssn---

---n*ky**ftrwlyek*ssc*kfi*rsskkrysinvn*ttnyift*rnryws*f*flpt
nysimlcs*kvsky**khinitnwldrfkyn*ndwk*kmle*iifksikyl*fk**sfin
*iiililgkaiwm*ng*i*tmeeyh*sikdsimykvqnipfir*tqwcl*lgswiwcfke
n*riitineli*rrkg**knhsksyklyl*klnnkffk

Frame C:
r**wiiksth*IDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPP
TESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLEN
PNIDNIDSIFHYAFTQVT---

---IENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQL
IIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSI
KSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKK
TKELLQSMNSYEGGRVNEKIIQNHINYIFKN*iinslk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ193 (CHQ193Q) /CSM/CH/CHQ1-D/CHQ193Q.Seq.d/                       1828   0.0
VFA275 (VFA275Q) /CSM/VF/VFA2-D/VFA275Q.Seq.d/                       1162   0.0
AHG850 (AHG850Q) /CSM/AH/AHG8-C/AHG850Q.Seq.d/                        934   0.0
CHR327 (CHR327Q) /CSM/CH/CHR3-B/CHR327Q.Seq.d/                        846   0.0
VHA580 (VHA580Q) /CSM/VH/VHA5-D/VHA580Q.Seq.d/                        844   0.0
AHD242 (AHD242Q) /CSM/AH/AHD2-B/AHD242Q.Seq.d/                         84   5e-15
SFH305 (SFH305Q) /CSM/SF/SFH3-A/SFH305Q.Seq.d/                         54   5e-06
CHN782 (CHN782Q) /CSM/CH/CHN7-D/CHN782Q.Seq.d/                         54   5e-06
SLG354 (SLG354Q) /CSM/SL/SLG3-C/SLG354Q.Seq.d/                         52   2e-05
CFC727 (CFC727Q) /CSM/CF/CFC7-B/CFC727Q.Seq.d/                         52   2e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    84   1e-40  16
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    54   1e-10  2
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        38   2e-04  19
CP000013|CP000013.1 Borrelia garinii PBi, complete genome.         34   5e-04  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    50   5e-04  16
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    34   0.005  15
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    38   0.007  17
AP006852|AP006852.1 Candida albicans genomic DNA, chromosome 7, complete sequence.    42   0.008  16
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36   0.009  9
BX538353|BX538353.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4.    36   0.018  14
dna update 2005.11. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...   152   1e-35
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...   107   7e-22
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso...    90   1e-16
AC116963_16(AC116963|pid:none) Dictyostelium discoideum chromoso...    88   4e-16
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...    86   3e-15
AC116982_71(AC116982|pid:none) Dictyostelium discoideum chromoso...    84   1e-14
AC116963_19(AC116963|pid:none) Dictyostelium discoideum chromoso...    73   2e-11
AM778955_136(AM778955|pid:none) Microcystis aeruginosa PCC 7806 ...    58   5e-07
(P37693) RecName: Full=Polyketide synthase hetM;  &AE2475(AE2475...    56   2e-06
U04436_3(U04436|pid:none) Anabaena sp. PCC 7120 putative polyket...    56   2e-06
protein update 2009. 4.11
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for CHQ193 is cyt
5' end seq. ID CHQ193F
5' end seq. 
>CHQ193F.Seq
ATCGGTAGTGATGGATTATTAAATCAACTCATTGAATCGATAACAATGAAAAGAATCATA
CAATATTAAAATATGATTTCAAAATTGATACAAAAAATATAATTGGTAAAAATATAATTA
TTACAGGTCAATCAGGTATTATTTTAGAAATCTTAAAATGGTTAATTAAATATTCACCTC
CAACAGAATCATTTGAAAACATTATCATTTTATCAAAATCATCATTAAAATGGGAGTTAG
AACTATTAATCAATAAAACAATATCAAGAAAGGATAATAACACCAAGTTCCATTTCAAGA
TCGTAGATGTTGGTGATTCAATTGAAATGAGAAAATCAATTAATCAAATTTTATTAGAAA
ATCCAAATATTGATAACATTGATTCAATATTCCATTACGCGTTCACTCAAGTAACTANNN
NNNNNNN
Length of 5' end seq. 427
3' end seq. ID CHQ193Z
3' end seq. 
>CHQ193Z.Seq
NNNNNNNNNNCAATTGAAAATATTAATAATTTACCAGGTGGTTATATGAAAAGTAAAGTA
GTTGTTGAAAATTTATTTAGAGAAGCAGCAAAAAGAGGTATTCCATCAATGTTAATTAGA
CTACCAATTATATTTTCACATGAAGAAACAGGTATTGGTCATGATTCTGATTTCTTCCAA
CTAATTATTCAATCATGTTATGCAGTTAAAAAGTATCCAAATATTGATAAAAACATATTA
ACATCACCAATTGGTTGGATAGGTTTAAATACAATTAAAATGATTGGAAATGAAAAATGT
TGGAATAAATCATCTTCAAATCAATTAAATATCTATAGTTTAAATAGTGAAGTTTCATCA
ATTAAATCATCATTCTCATTCTTGGAAAAGCAATATGGATGTGAAATGGTTGAATATGAA
CAATGGAAGAATATCATTAATCAATCAAAGATTCTATCATGTATAAAGTTCAAAACATTC
CATTCATTAGATAGACTCAATGGTGTTTATAACTTGGGTCATGGATTTGGTGTTTCAAAG
AAAACTAAAGAATTATTACAATCAATGAACTCATATGAAGGAGGAAGGGTTAATGAAAAA
ATCATTCAAAATCATATAAACTATATCTTTAAAAATTAAATAATAAATTCTTTAAAA
Length of 3' end seq. 657
Connected seq. ID CHQ193P
Connected seq. 
>CHQ193P.Seq
ATCGGTAGTGATGGATTATTAAATCAACTCATTGAATCGATAACAATGAAAAGAATCATA
CAATATTAAAATATGATTTCAAAATTGATACAAAAAATATAATTGGTAAAAATATAATTA
TTACAGGTCAATCAGGTATTATTTTAGAAATCTTAAAATGGTTAATTAAATATTCACCTC
CAACAGAATCATTTGAAAACATTATCATTTTATCAAAATCATCATTAAAATGGGAGTTAG
AACTATTAATCAATAAAACAATATCAAGAAAGGATAATAACACCAAGTTCCATTTCAAGA
TCGTAGATGTTGGTGATTCAATTGAAATGAGAAAATCAATTAATCAAATTTTATTAGAAA
ATCCAAATATTGATAACATTGATTCAATATTCCATTACGCGTTCACTCAAGTAACTA---
-------CAATTGAAAATATTAATAATTTACCAGGTGGTTATATGAAAAGTAAAGTAGTT
GTTGAAAATTTATTTAGAGAAGCAGCAAAAAGAGGTATTCCATCAATGTTAATTAGACTA
CCAATTATATTTTCACATGAAGAAACAGGTATTGGTCATGATTCTGATTTCTTCCAACTA
ATTATTCAATCATGTTATGCAGTTAAAAAGTATCCAAATATTGATAAAAACATATTAACA
TCACCAATTGGTTGGATAGGTTTAAATACAATTAAAATGATTGGAAATGAAAAATGTTGG
AATAAATCATCTTCAAATCAATTAAATATCTATAGTTTAAATAGTGAAGTTTCATCAATT
AAATCATCATTCTCATTCTTGGAAAAGCAATATGGATGTGAAATGGTTGAATATGAACAA
TGGAAGAATATCATTAATCAATCAAAGATTCTATCATGTATAAAGTTCAAAACATTCCAT
TCATTAGATAGACTCAATGGTGTTTATAACTTGGGTCATGGATTTGGTGTTTCAAAGAAA
ACTAAAGAATTATTACAATCAATGAACTCATATGAAGGAGGAAGGGTTAATGAAAAAATC
ATTCAAAATCATATAAACTATATCTTTAAAAATTAAATAATAAATTCTTTAAAA
Length of connected seq. 1064
Full length Seq ID -
Full length Seq. -
Length of full length seq. -