>CHQ187 (CHQ187Q) /CSM/CH/CHQ1-D/CHQ187Q.Seq.d/
AATATTTTTAANTATATATNTTANTATATATTAATATATTAATATTAATAAAATGAAAAT
ATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTNTTAAATATTTCATC
ACAAGCATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAA
AAATGCATTGNATGATGAAGGTGAACCANGATTTGGAAATGTTGAAATTTCTTTAGGAAA
TGCNNCTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATT
TATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGA
TTATTACTTTGAAACCTATGAAAAGACATTGGCXXXXXXXXXX

iflxiyxxiy*YININKMKILYSLLLISSIILNTVLNISSQAYDQRILALKGKCYLDSNK
NALXDEGEPXFGNVEISLGNAXDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKD
YYFETYEKTL---

Frame A:
nifxyixxyiliy*y**neniifiiinikynfkycxkyfitsi*styfgikrkmlfrfk*
kcix**r*txiwkc*nffrkcx*l*gk*isntlfic*wyiyi*winstynl*iyiyqskr
lll*nl*kdi---


Frame B:
iflxiyxxiy*YININKMKILYSLLLISSIILNTVLNISSQAYDQRILALKGKCYLDSNK
NALXDEGEPXFGNVEISLGNAXDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKD
YYFETYEKTL---


Frame C:
yf*xyxlxyinililik*kyyihyy*yqv*f*ilx*ifhhkhminvfwh*kenvi*iqik
mhxmmkvnxdlemlkfl*emxliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqki
itlkpmkrhw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ187 (CHQ187Q) /CSM/CH/CHQ1-D/CHQ187Q.Seq.d/                        563   e-160
SHJ874 (SHJ874Q) /CSM/SH/SHJ8-D/SHJ874Q.Seq.d/                        555   e-157
SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/                        555   e-157
SHL845 (SHL845Q) /CSM/SH/SHL8-B/SHL845Q.Seq.d/                        555   e-157
SHL837 (SHL837Q) /CSM/SH/SHL8-B/SHL837Q.Seq.d/                        555   e-157
SHL833 (SHL833Q) /CSM/SH/SHL8-B/SHL833Q.Seq.d/                        555   e-157
SHL807 (SHL807Q) /CSM/SH/SHL8-A/SHL807Q.Seq.d/                        555   e-157
SHL805 (SHL805Q) /CSM/SH/SHL8-A/SHL805Q.Seq.d/                        555   e-157
SHL804 (SHL804Q) /CSM/SH/SHL8-A/SHL804Q.Seq.d/                        555   e-157

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC005213|AC005213.1 Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence.    46   0.54   1
AC005188|AC005188.1 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence.    46   0.54   1
AC161669|AC161669.2 Bos taurus clone CH240-104B14, WORKING DRAFT SEQUENCE, 19 unordered pieces.    40   1.6    3
AV954562|AV954562.1 Ciona intestinalis cDNA, clone:cicl07i13, 5' end, single read.    44   2.1    1
AV984767|AV984767.1 Ciona intestinalis cDNA, clone:cilv38i14, 5' end, single read.    44   2.1    1
CW445129|CW445129.1 fsbb001f170b06k0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f170b06, genomic survey sequence.    44   2.1    1
AC157063|AC157063.2 Bos taurus clone CH240-64J16, *** SEQUENCING IN PROGRESS ***, 29 unordered pieces.    40   2.4    2
AY689436|AY689436.1 Deerpox virus W-848-83, complete genome.       38   2.9    3
AY689437|AY689437.1 Deerpox virus W-1170-84, complete genome.      38   3.1    3
AC163341|AC163341.4 Mus musculus chromosome 6 clone RP24-138G13, WORKING DRAFT SEQUENCE, 6 unordered pieces.    32   3.9    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,...    44   0.001
CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    40   0.024
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    39   0.041
CP000804_904(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    35   0.78
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    35   0.78
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    33   2.3
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    33   3.0
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    33   3.9
AP004236_1(AP004236|pid:none) Oryza sativa Japonica Group genomi...    32   5.1
AP008212_1457(AP008212|pid:none) Oryza sativa (japonica cultivar...    32   5.1

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for CHQ187 is end

>CHQ187F.Seq
AATATTTTTAANTATATATNTTANTATATATTAATATATTAATATTAATAAAATGAAAAT
ATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTNTTAAATATTTCATC
ACAAGCATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAA
AAATGCATTGNATGATGAAGGTGAACCANGATTTGGAAATGTTGAAATTTCTTTAGGAAA
TGCNNCTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATT
TATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGA
TTATTACTTTGAAACCTATGAAAAGACATTGGCNNNNNNNNNN