CHQ176 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHQ176
Library	CH (Link to library)
Clone ID	CHQ176 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11926-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHQ1-D/CHQ176Q.Seq.d/
Representative seq. ID	CHQ176P (Link to Original site)
Representative DNA sequence	>CHQ176 (CHQ176Q) /CSM/CH/CHQ1-D/CHQ176Q.Seq.d/ AACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATGC CTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATG TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGA TAACAATGCCTGTACAATTGATGCATGTACAAAAGAAGGTGGTGTAACTCATACTCCAGT CAATACTGATGATAACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTC CCACACCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTC AACCGGTTGTTGCAACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTC ATGTACCAAACCAACAGGTGTCACTCATACCCCAGTCAATGTAGATGATAACAACAAATG TACAATTGATGCATGTACCAAAGAANGTGGTGTAACTCATACTCCAGTCAATACTGATGA TAACAATGCATGTACCCTTTGATTCCTGTTCCCCATCAAACTGGTTTTTTCCACGCTTCC ATTTACTGTGATGATAGTAATCCATGTNCCATAGATTCATGCCATAATTCAACTGGTTGT TGCACACTCCAATCATGGTTGATGATAATAATCCTTGTCCCGTAAATTCTGGTNCTAAAA CANGGGGGGGCACTCAXXXXXXXXXXAACACCAGTTTCATGTCCAAAACCAAAAGATAAA TGTTCAATCTCTCAATGTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACT TCTGATAAATGTAATGAAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGC TGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACC GTCTCAAATGTAGTATGTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGAC ACTGGTAAATGTCAATTCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATT TCAAAATGTGATCCAATTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGAT GACCTTTGTAACATTGGTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAA GATTGTGATGATAATAATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGT ATTAACAAACCATATAATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGT GGTNTCATTTGGTGGTGGTACAGA
sequence update	2002.10.25
Translated Amino Acid sequence	lvvtlqsmlmiiihvpsmpvpnqqvllipqsmmittnvqlmhvpkkvvlipqsilmi tmpvqlmhvqkkvvlilqsilmitmlvpltpvhhqlafptpqltvmivihvpthvqiq pvvatlqsmlmiiihvlihvpnqqvslipqsmmittnvqlmhvpkxvvlilqsilmi tmhvpfdscspsnwffprfhll***smxhrfmpFNWLLHTPIMVDDNNPCPVNSGXKT XGGT--- ---TPVSCPKPKDKCSISQCDSAKGCIEVPMNCTSDKCNEASCCDGVCTSKPISCPKPKN KCQVAKCDLIKGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPI KGTITNSTVNCECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYN VITSGSNLISGLIGGXIWWWYR
Translated Amino Acid sequence (All Frames)	Frame A: nwlckhssqc**smyrrclyqinrcysypsqcrqqmyncmyqrrwcnsypsqy* qclyncmykrrwcnsyssqy**qclypllftinwrfphpnl*smyrrlmfkf nrllqhsnqcsmycrfmyqtnrchsypsqcrqqmyncmyqrxwcnsyssqy* qcmyplipvphqtgffhasiycddsnpcxidschnstgcctlqswlmiiilvpilvlk xggal--- ---ntsfmsktkrmfnlsmfsqrlhrspnelyfmsimlwclylktnlsktke vssckmfnrlyrlkcsmwclyrrfmlfrhwmsirtnqtskekqmyhfkmsn rynhqqyrklmplhwmlryrkmlqtkrl*sknslrfqdwmyqti* cyhkwffnlwfnwwxhlvvvq Frame B: tgcvntpvnvddnnpctvdactkstgvthtpvnvddnnkctidactkeggvthtpvntdd nnactidactkeggvthtpvntddnnactldscspstgvshtpincddsnpctvdscsns tgccntpinvddnnpctvdsctkptgvthtpvnvddnnkctidactkexgvthtpvntdd nnactlflfpiklvfstlpftvmivihvpihaiiqlvvahsnhg**slsrkfwxn xgghs--- ---TPVSCPKPKDKCSISQCDSAKGCIEVPMNCTSDKCNEASCCDGVCTSKPISCPKPKN KCQVAKCDLIKGCTVSNVVCDDGNACTEDSCCSDTGKCQFEPIKLPKNKNKCIISKCDPI KGTITNSTVNCECDDLCNIGECCEDTGKCNYRQKDCDDNNPKTADSCDSKTGKCINKPYN VITSGSNLISGLIGGXIWWWYR Frame C: lvvtlqsmlmiiihvpsmpvpnqqvllipqsmmittnvqlmhvpkkvvlipqsilmi tmpvqlmhvqkkvvlilqsilmitmlvpltpvhhqlafptpqltvmivihvpthvqiq pvvatlqsmlmiiihvlihvpnqqvslipqsmmittnvqlmhvpkxvvlilqsilmi tmhvpfdscspsnwffprfhll***smxhrfmpFNWLLHTPIMVDDNNPCPVNSGXKT XGGT--- ---hqfhvqnqkinvqslnviqpkvasksqivllinvmkhhvvmvfvpqnqlavqnqri svklqnvilkvvpsqmyvmmvmlvpkihvvqtlvnvnsnqsnfqriktnvsfqnviql kvqsptvptvnvmtfvtlvnvvkiqenvitdkkivmiiiqkqlivaiprlvnvltnhim lsqvvlislvlvvsfgggt
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHQ176 (CHQ176Q) /CSM/CH/CHQ1-D/CHQ176Q.Seq.d/ 1413 0.0 SHF211 (SHF211Q) /CSM/SH/SHF2-A/SHF211Q.Seq.d/ 1245 0.0 CHF469 (CHF469Q) /CSM/CH/CHF4-C/CHF469Q.Seq.d/ 1245 0.0 CHI784 (CHI784Q) /CSM/CH/CHI7-D/CHI784Q.Seq.d/ 1241 0.0 SHG420 (SHG420Q) /CSM/SH/SHG4-A/SHG420Q.Seq.d/ 1193 0.0 CHE515 (CHE515Q) /CSM/CH/CHE5-A/CHE515Q.Seq.d/ 1176 0.0 SHG235 (SHG235Q) /CSM/SH/SHG2-B/SHG235Q.Seq.d/ 1172 0.0 CHR337 (CHR337Q) /CSM/CH/CHR3-B/CHR337Q.Seq.d/ 1170 0.0 SHG431 (SHG431Q) /CSM/SH/SHG4-B/SHG431Q.Seq.d/ 1154 0.0 SHG408 (SHG408Q) /CSM/SH/SHG4-A/SHG408Q.Seq.d/ 1154 0.0
own update	2002.10. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X78948\|X78948.1 D.minutum ecmB gene. 50 4e-20 6 CJ252199\|CJ252199.1 Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:M5C1042H03, 3' end partial sequence. 42 0.007 2 CK991559\|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence. 30 0.022 5 BQ739629\|BQ739629.1 PfESToab48c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9U0J6 Q9U0J6 HYPOTHETICAL 312.5 KD PROTEIN. ;, mRNA sequence. 30 0.025 4 BX231032\|BX231032.1 Danio rerio genomic clone DKEY-254O18, genomic survey sequence. 30 0.056 5 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 50 0.12 1 G37776\|G37776.1 atp Plasmodium falciparum haploid Plasmodium falciparum STS genomic, sequence tagged site. 28 0.22 4 AF467890\|AF467890.1 Mus musculus chromosome 17 clone 160i3 strain C57BL/6J, * SEQUENCING IN PROGRESS *, 4 ordered pieces. 48 0.48 1 AC154238\|AC154238.1 Mus musculus chromosome 17 clone RP24-162O23, WORKING DRAFT SEQUENCE, 9 unordered pieces. 48 0.48 1 AC138642\|AC138642.10 Mus musculus chromosome 3, clone RP23-21O7, complete sequence. 48 0.48 1
dna update	2005.11. 1
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 364 e-177 (P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 280 e-110 A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 280 e-109 S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 244 6e-63 AC116984_103(AC116984\|pid:none) Dictyostelium discoideum chromos... 208 2e-57 AC117072_61(AC117072\|pid:none) Dictyostelium discoideum chromoso... 221 4e-57 (Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 91 1e-30 (Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 86 2e-30 (Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 110 1e-22 (Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 106 2e-21
protein update	2009. 4.11
PSORT	psg: 0.89 gvh: 0.32 alm: 0.41 top: 0.37 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: cytoplasmic 40.0 %: nuclear 12.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: vacuolar >> prediction for CHQ176 is cyt
5' end seq. ID	CHQ176F
5' end seq.	>CHQ176F.Seq AACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATGC CTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATG TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGA TAACAATGCCTGTACAATTGATGCATGTACAAAAGAAGGTGGTGTAACTCATACTCCAGT CAATACTGATGATAACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTC CCACACCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTC AACCGGTTGTTGCAACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTC ATGTACCAAACCAACAGGTGTCACTCATACCCCAGTCAATGTAGATGATAACAACAAATG TACAATTGATGCATGTACCAAAGAANGTGGTGTAACTCATACTCCAGTCAATACTGATGA TAACAATGCATGTACCCTTTGATTCCTGTTCCCCATCAAACTGGTTTTTTCCACGCTTCC ATTTACTGTGATGATAGTAATCCATGTNCCATAGATTCATGCCATAATTCAACTGGTTGT TGCACACTCCAATCATGGTTGATGATAATAATCCTTGTCCCGTAAATTCTGGTNCTAAAA CANGGGGGGGCACTCANNNNNNNNNN
Length of 5' end seq.	746
3' end seq. ID	CHQ176Z
3' end seq.	>CHQ176Z.Seq NNNNNNNNNNAACACCAGTTTCATGTCCAAAACCAAAAGATAAATGTTCAATCTCTCAAT GTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACTTCTGATAAATGTAATG AAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGCTGTCCAAAACCAAAGA ATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACCGTCTCAAATGTAGTAT GTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGACACTGGTAAATGTCAAT TCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATTTCAAAATGTGATCCAA TTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGATGACCTTTGTAACATTG GTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAAGATTGTGATGATAATA ATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGTATTAACAAACCATATA ATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGTGGTNTCATTTGGTGGT GGTACAGA
Length of 3' end seq.	608
Connected seq. ID	CHQ176P
Connected seq.	>CHQ176P.Seq AACTGGTTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACCGTCGATGC CTGTACCAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAACAACAAATG TACAATTGATGCATGTACCAAAGAAGGTGGTGTAACTCATACCCCAGTCAATACTGATGA TAACAATGCCTGTACAATTGATGCATGTACAAAAGAAGGTGGTGTAACTCATACTCCAGT CAATACTGATGATAACAATGCTTGTACCCTTGACTCCTGTTCACCATCAACTGGCGTTTC CCACACCCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGACTCATGTTCAAATTC AACCGGTTGTTGCAACACTCCAATCAATGTTGATGATAATAATCCATGTACTGTAGATTC ATGTACCAAACCAACAGGTGTCACTCATACCCCAGTCAATGTAGATGATAACAACAAATG TACAATTGATGCATGTACCAAAGAANGTGGTGTAACTCATACTCCAGTCAATACTGATGA TAACAATGCATGTACCCTTTGATTCCTGTTCCCCATCAAACTGGTTTTTTCCACGCTTCC ATTTACTGTGATGATAGTAATCCATGTNCCATAGATTCATGCCATAATTCAACTGGTTGT TGCACACTCCAATCATGGTTGATGATAATAATCCTTGTCCCGTAAATTCTGGTNCTAAAA CANGGGGGGGCACTCA----------AACACCAGTTTCATGTCCAAAACCAAAAGATAAA TGTTCAATCTCTCAATGTGATTCAGCCAAAGGTTGCATCGAAGTCCCAATGAATTGTACT TCTGATAAATGTAATGAAGCATCATGTTGTGATGGTGTTTGTACCTCAAAACCAATTAGC TGTCCAAAACCAAAGAATAAGTGTCAAGTTGCAAAATGTGATTTAATTAAAGGTTGTACC GTCTCAAATGTAGTATGTGATGATGGTAATGCTTGTACCGAAGATTCATGTTGTTCAGAC ACTGGTAAATGTCAATTCGAACCAATCAAACTTCCAAAGAATAAAAACAAATGTATCATT TCAAAATGTGATCCAATTAAAGGTACAATCACCAACAGTACCGTAAACTGTGAATGTGAT GACCTTTGTAACATTGGTGAATGTTGTGAAGATACAGGAAAATGTAATTACAGACAAAAA GATTGTGATGATAATAATCCAAAAACAGCTGATAGTTGCGATTCCAAGACTGGTAAATGT ATTAACAAACCATATAATGTTATCACAAGTGGTTCTAATTTAATCTCTGGTTTAATTGGT GGTNTCATTTGGTGGTGGTACAGA
Length of connected seq.	1334
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas