CHQ169
Library CH
(Link to library)
Clone ID CHQ169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHQ169 (CHQ169Q) /CSM/CH/CHQ1-C/CHQ169Q.Seq.d/
XXXXXXXXXXCAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAA
AGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAG
TTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACNTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGCGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGA
sequence update 2002. 9.10
Translated Amino Acid sequence
---NNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAV
QEAEEIERQQNGNGSXAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY
EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE


Translated Amino Acid sequence (All Frames)
Frame A:
---NNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAV
QEAEEIERQQNGNGSXAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEY
EAAQHEVAFLDENEQDAAKLQNEMDQLELLLEE


Frame B:
---ttsiiitittlklinqrkvlnklkll*rmkdfifkklkmlqrdymkkfiipi*ikqf
krlkklkdnkmvmvhxl*tlirl*lkwemlkimklpmnkmplnklniynvlkmakismsm
klpnmklpf*mkmnkmllnykmkwtn*nsylkr


Frame C:
---qhq***q*ql*s**ikekcsts*ncfre*ktlssrs*rcsreti*rns*fqfe*sss
rg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kwrryr*v*
scpt*sclfr*k*trcc*itk*ngpirtlt*r


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHQ169 (CHQ169Q) /CSM/CH/CHQ1-C/CHQ169Q.Seq.d/ 890 0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/ 882 0.0
SFF541 (SFF541Q) /CSM/SF/SFF5-B/SFF541Q.Seq.d/ 882 0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ 882 0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/ 882 0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/ 882 0.0
CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/ 882 0.0
CHO755 (CHO755Q) /CSM/CH/CHO7-C/CHO755Q.Seq.d/ 882 0.0
CHO654 (CHO654Q) /CSM/CH/CHO6-C/CHO654Q.Seq.d/ 882 0.0
CHO428 (CHO428Q) /CSM/CH/CHO4-B/CHO428Q.Seq.d/ 882 0.0

own update 2002.10. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 882 0.0 1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 76 7e-10 1
CR762465|CR762465.6 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone DKEY-38M12. 42 3e-05 2
AL929331|AL929331.15 Zebrafish DNA sequence from clone DKEY-16O9. 42 3e-05 2
CR786567|CR786567.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 42 4e-05 2
CN585450|CN585450.1 USDA-FP_128521 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP072_H07, mRNA sequence. 60 4e-05 1
CX582480|CX582480.1 TTE00021488 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 54 0.003 1
BX649504|BX649504.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-242G21. 54 0.003 1
AL954723|AL954723.11 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-1L13. 54 0.003 1
AC093979|AC093979.6 Rattus norvegicus clone CH230-11D13, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 54 0.003 1
dna update 2005.11. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 272 2e-72
(Q3B820) RecName: Full=UPF0564 protein FAM161A; 44 0.002
AM392832_1(AM392832|pid:none) Synthetic construct Homo sapiens c... 44 0.002
BC107162_1(BC107162|pid:none) Homo sapiens family with sequence ... 44 0.002
AM393518_1(AM393518|pid:none) Synthetic construct Homo sapiens c... 44 0.002
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik... 42 0.006
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv... 41 0.011
AL844506_76(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 41 0.011
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir... 41 0.011
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co... 41 0.011
protein update 2009. 5.20
PSORT

psg: 0.44 gvh: 0.17 alm: 0.61 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for CHQ169 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHQ169Z
3' end seq.
>CHQ169Z.Seq
NNNNNNNNNNCAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAA
AGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAG
TTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACNTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGCGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGA
Length of 3' end seq. 462
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -