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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ141
Library CH
(Link to library)
Clone ID CHQ141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16477-1
Original site URL
Representative seq. ID CHQ141P
(Link to Original site)
Representative DNA sequence 
>CHQ141 (CHQ141Q) /CSM/CH/CHQ1-B/CHQ141Q.Seq.d/
ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT
TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG
GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA
GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG
ACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGA
GTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTG
TATGTTTGCAATGTCAAGATGAACTTTGTACAGTXXXXXXXXXXTCAAGGAATACTTTAG
TCCAAATCAATCAGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCATTGGTGGTGCACG
TCTTTCTCACAATCATCGTAAACAATATAACTATGTATATCAATCACTCTCCTTGTGGCA
ACATATTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGATCTTTTATGCGG
ACACAGATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAA
CGTTGGTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTG
GGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCAT
CGATAAATACACTCAAATCTCTAGAATCNTAAGTCCAATCGTTTTAACCATTGAATATAT
TCCAAAGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACA
AACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGC
CGATAACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAATG
GTCTGCTCAAATCGCAAAGAAACCTTATTATCCAATATTTTATTATCAGGTTTTAGG
sequence update 2002.10.25
Translated Amino Acid sequence 
KIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHSSEHTKNELKVASKTSKKR
RDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSEDEETPGMCCECTDQPAEVV
CLQCQDELCT---

---KEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWYF
AEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDHN
VPNSLVFIDKYTQISRIXSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFFK
HAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYYPIFYYQVL
Translated Amino Acid sequence (All Frames) 
Frame A:
ikl*iiyktfkqivqp*y*vy*lt**yl*q*ligyiiyflgillnipkts*rwrpklqkk
eeinlkkcqnkin*qkfwittlmi*i*kkmtqpivnlnl*vkmkklqvcavnvqinqlkl
yvcnvkmnfvq---

---srntlvqinqrevfhwlwnmalvvhvfltiivnnitmyinhspcgniffmiclnfgt
lqklifyadtdinyqtlvkv*ivfnnvqtlvklcivfyvklkkklvmiglvlplfiwvii
tfqtlwfssintlksles*vqsf*plnifqrspiqi*lltsktplvvhkl*pkssfvisl
ntlsmvvvpitfsmlalvlmvd*lllgngllksqrnliiqyfiirf*

Frame B:
*ncelytklsnr*fspnirfid*pnntcsnn*lgi*fifwaff*tyqkrvkggvqnfkkk
krsi*rnvktk*inksfg*rp**yryrrr*lnqs*i*iye*r*rnsryvl*myrsts*sc
mfamsr*tlys---

---qgil*sksirerffigfgtwhwwctsfsqss*ti*lcisitllvatyss*yv*tlvl
crn*sfmrtqisiikhwsrsksystmskrw*nya*ystsnskksw**lgwffrysfg*s*
rsklfgfhr*ihsnl*nxksnrfnh*iyskdhrskfsclhqkhlwwstnfnqnhpl*fl*
trfrw*wcr*lfrcwlly*w*infclamvcsnrketllsnillsgfr

Frame C:
KIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHSSEHTKNELKVASKTSKKR
RDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSEDEETPGMCCECTDQPAEVV
CLQCQDELCT---

---KEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWYF
AEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDHN
VPNSLVFIDKYTQISRIXSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFFK
HAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYYPIFYYQVL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ141 (CHQ141Q) /CSM/CH/CHQ1-B/CHQ141Q.Seq.d/                       1974   0.0
VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/                       1281   0.0
VHI553 (VHI553Q) /CSM/VH/VHI5-C/VHI553Q.Seq.d/                       1281   0.0
VHE160 (VHE160Q) /CSM/VH/VHE1-C/VHE160Q.Seq.d/                       1281   0.0
VHD241 (VHD241Q) /CSM/VH/VHD2-B/VHD241Q.Seq.d/                       1281   0.0
VHC810 (VHC810Q) /CSM/VH/VHC8-A/VHC810Q.Seq.d/                       1281   0.0
VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/                       1281   0.0
CHS293 (CHS293Q) /CSM/CH/CHS2-D/CHS293Q.Seq.d/                       1281   0.0
CHR668 (CHR668Q) /CSM/CH/CHR6-C/CHR668Q.Seq.d/                       1281   0.0
CHR513 (CHR513Q) /CSM/CH/CHR5-A/CHR513Q.Seq.d/                       1281   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX571856|BX571856.1 Staphylococcus aureus subsp. aureus strain MRSA252, complete genome.    32   0.021  33
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                  36   0.064  11
AC079310|AC079310.20 Homo sapiens 12 BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   0.086  6
AC025686|AC025686.2 Homo sapiens chromosome 12 clone RP11-681J20 map 12, WORKING DRAFT SEQUENCE, 19 unordered pieces.    38   0.095  7
AC134426|AC134426.20 Mus musculus chromosome 1, clone RP24-342A12, complete sequence.    50   0.096  1
BX842645|BX842645.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 4/4.    36   0.20   6
AC144931|AC144931.27 Medicago truncatula clone mth2-22b18, complete sequence.    34   0.25   7
AP007774|AP007774.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 3, clone:LjT05E13, TM1058.    34   0.29   8
AC021798|AC021798.5 Homo sapiens clone RP11-25K3, WORKING DRAFT SEQUENCE, 17 unordered pieces.    48   0.38   1
AC099065|AC099065.2 Homo sapiens chromosome 1 clone RP11-105I12, complete sequence.    48   0.38   1
dna update 2005.10.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   259   1e-67
CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara...   252   2e-65
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   238   3e-61
AL844507_193(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...   230   5e-59
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr...   230   5e-59
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ...   217   6e-55
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c...   215   2e-54
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35.    215   2e-54
CR382125_995(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   214   4e-54
AM494971_416(AM494971|pid:none) Leishmania braziliensis chromoso...   214   4e-54
protein update 2009. 4.11
PSORT 

 psg: 0.73  gvh: 0.50  alm: 0.11  top: 0.60  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHQ141 is nuc
5' end seq. ID CHQ141F
5' end seq. 
>CHQ141F.Seq
ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT
TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG
GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA
GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG
ACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGA
GTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTG
TATGTTTGCAATGTCAAGATGAACTTTGTACAGTNNNNNNNNNN
Length of 5' end seq. 404
3' end seq. ID CHQ141Z
3' end seq. 
>CHQ141Z.Seq
NNNNNNNNNNTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGCT
TTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTAT
GTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTAC
TTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGGT
CTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCAA
ACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCAT
AACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCNTAAGT
CCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTAC
ATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTTT
AAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGAT
GGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCCA
ATATTTTATTATCAGGTTTTAGG
Length of 3' end seq. 683
Connected seq. ID CHQ141P
Connected seq. 
>CHQ141P.Seq
ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT
TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG
GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA
GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG
ACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTATGA
GTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAGTTG
TATGTTTGCAATGTCAAGATGAACTTTGTACAGT----------TCAAGGAATACTTTAG
TCCAAATCAATCAGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCATTGGTGGTGCACG
TCTTTCTCACAATCATCGTAAACAATATAACTATGTATATCAATCACTCTCCTTGTGGCA
ACATATTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGATCTTTTATGCGG
ACACAGATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAA
CGTTGGTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTG
GGTTGGTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCAT
CGATAAATACACTCAAATCTCTAGAATCNTAAGTCCAATCGTTTTAACCATTGAATATAT
TCCAAAGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACA
AACTTTAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGC
CGATAACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAATG
GTCTGCTCAAATCGCAAAGAAACCTTATTATCCAATATTTTATTATCAGGTTTTAGG
Length of connected seq. 1067
Full length Seq ID -
Full length Seq. -
Length of full length seq. -