>CHQ128 (CHQ128Q) /CSM/CH/CHQ1-B/CHQ128Q.Seq.d/
XXXXXXXXXXAGTCCATTCTNACAAATCNTACAATAGTCATCNCAATAAAGATGATANCN
NTGGTGGTTANGGTGGTGGTGGTGGTGGTAATGGAGGNTACAGTAACAACCGTAATGATA
TAAGAGAAGATAAATCAGATNACTCAATGCATCACCCAGACTTTAGCAACAATGGTGGTT
CATATAATTNNACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATCCATTTTA
ATTCAATATNAATTAAAATCAT

---VHSXKSYNSHXNKDDXXGGXGGGGGGNGGYSNNRNDIREDKSDXSMHHPDFSNNGGS
YNXTFTSCHSFNKK**ihfnsixiki

Frame A:
---VHSXKSYNSHXNKDDXXGGXGGGGGGNGGYSNNRNDIREDKSDXSMHHPDFSNNGGS
YNXTFTSCHSFNKK**ihfnsixiki


Frame B:
---siltnxtivixikmixxvvxvvvvvvmextvttvmi*ekinqxtqcitqtlatmvvh
iixhsphvirliknnksiliqyxlks


Frame C:
---pfxqixq*ssq*r*xxwwlxwwwww*wrxq*qp**ykrr*irxlnasprl*qqwwfi
*xxihlmsfv**kiinpf*fnxn*nh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ128 (CHQ128Q) /CSM/CH/CHQ1-B/CHQ128Q.Seq.d/                        313   7e-85
VHO596 (VHO596Q) /CSM/VH/VHO5-D/VHO596Q.Seq.d/                        297   4e-80
VHN622 (VHN622Q) /CSM/VH/VHN6-A/VHN622Q.Seq.d/                        297   4e-80
VFE418 (VFE418Q) /CSM/VF/VFE4-A/VFE418Q.Seq.d/                        297   4e-80
CHR552 (CHR552Q) /CSM/CH/CHR5-C/CHR552Q.Seq.d/                        297   4e-80
CHN187 (CHN187Q) /CSM/CH/CHN1-D/CHN187Q.Seq.d/                        297   4e-80
CHI596 (CHI596Q) /CSM/CH/CHI5-D/CHI596Q.Seq.d/                        297   4e-80
CHH489 (CHH489Q) /CSM/CH/CHH4-D/CHH489Q.Seq.d/                        297   4e-80
AHN801 (AHN801Q) /CSM/AH/AHN8-A/AHN801Q.Seq.d/                        297   4e-80
AHL423 (AHL423Q) /CSM/AH/AHL4-A/AHL423Q.Seq.d/                        297   4e-80

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD291103|CD291103.1 StrPu538.004262 Sea urchin embryo 7hr cleavage stage cDNA libraryCALTp538A2015;MPI_538_15A20 5', mRNA sequence.    38   0.005  2
CZ521656|CZ521656.1 GMW2-72J17a.g2 GMW2 Glycine max genomic, genomic survey sequence.    42   0.093  2
AZ671755|AZ671755.1 ENTHN52TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.32   2
AZ529860|AZ529860.1 ENTCW76TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.34   2
BH157983|BH157983.1 ENTSU21TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.34   2
DN806195|DN806195.1 76948050 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-72F17 5', mRNA sequence.    46   0.34   1
CG821045|CG821045.1 SOYAX57TH LargeInsertSoybeanGenLib Glycine max genomic clone B46C06:MTP6J18, genomic survey sequence.    46   0.34   1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.42   6
BX119916|BX119916.10 Zebrafish DNA sequence from clone CH211-202I5 in linkage group 11.    34   0.82   5
AX344571|AX344571.1 Sequence 22 from Patent WO0200932.             42   0.87   3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;...    76   3e-13

 psg: 0.54  gvh: 0.34  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for CHQ128 is cyt

>CHQ128Z.Seq
NNNNNNNNNNAGTCCATTCTNACAAATCNTACAATAGTCATCNCAATAAAGATGATANCN
NTGGTGGTTANGGTGGTGGTGGTGGTGGTAATGGAGGNTACAGTAACAACCGTAATGATA
TAAGAGAAGATAAATCAGATNACTCAATGCATCACCCAGACTTTAGCAACAATGGTGGTT
CATATAATTNNACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATCCATTTTA
ATTCAATATNAATTAAAATCAT