>CHQ109 (CHQ109Q) /CSM/CH/CHQ1-A/CHQ109Q.Seq.d/
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTAAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTXXXXXXXXXXGGTTTATAATGTTTCTTCAGACATTTTAGTGGTAT
CCAATTCATTGGCAGATGGTATTNTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAG
TTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTA
AGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAA
AACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAA
AACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATC
ATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCT
CTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCAC
CACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAA
CAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTA
CAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGAC
CAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGA
GAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAG
AAAAAGAAGNACAAAAAGAAACA

qw*fl*l*ylfss*YLNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTF---

---VYNVSSDILVVSNSLADGIXQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSI
GFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQT
IFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCST
HKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKN
KKNKSKKTKEQINKEKEXQKET

Frame A:
qw*fl*l*ylfss*YLNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTF---

---gl*cffrhfsgiqfigrwyxskncnw*rtiysck**rfldyni*nstygik*ewsid
wfqkg**rsis*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*i*sn
hfpkncft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfn
p*srw*ysm*m*psyrvwfn*ickilskhldhywtsswwccicscngwyccigkekekqk
qkeqikenqrtnqqrkrxtkrn

Frame B:
ngnffscdisspvdt*iglhvvlfsllqlyklwvvlqdvnillqtf*wlhwvvvkvyqla
nnwnflkveslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhwy*mlviqkvvm
ekh*pmigrlvgqiqtln*iiywikimqp*qfqmifchlvklil---

---VYNVSSDILVVSNSLADGIXQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSI
GFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQT
IFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCST
HKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKN
KKNKSKKTKEQINKEKEXQKET

Frame C:
mvislvvisllqlilk*afm*fsflfcnftnfg*fskm*iycfkhsngyig*w*kciswp
tigifsrwnhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*sigirc*sfkrw*w
ksinl*lvg*wgrykhsik*sigsk*cnhnnsk*sfviwsnlyf---

---fimflqtf*wypihwqmvxfkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrl
vskrmmkvnllmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikp
fsqklfhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvqp
ik*mvifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerktkt
krtnqrkpknkstkkkkxkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ109 (CHQ109Q) /CSM/CH/CHQ1-A/CHQ109Q.Seq.d/                       2303   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1362   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1362   0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/                       1362   0.0
SFG748 (SFG748Q) /CSM/SF/SFG7-B/SFG748Q.Seq.d/                       1362   0.0
CHR819 (CHR819Q) /CSM/CH/CHR8-A/CHR819Q.Seq.d/                       1362   0.0
CHR576 (CHR576Q) /CSM/CH/CHR5-D/CHR576Q.Seq.d/                       1362   0.0
CHR150 (CHR150Q) /CSM/CH/CHR1-C/CHR150Q.Seq.d/                       1362   0.0
CHQ625 (CHQ625Q) /CSM/CH/CHQ6-B/CHQ625Q.Seq.d/                       1362   0.0
CHL279 (CHL279Q) /CSM/CH/CHL2-D/CHL279Q.Seq.d/                       1362   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    38   0.003  29
BX119904|BX119904.4 Human DNA sequence from clone RP11-232D9 on chromosome X Contains  two pseudogenes similar to part of solute carrier family 6  (neurotransmitter transporter) member 14 (SLC6A14) and a novel gene.    36   0.005  14
AC163646|AC163646.2 Mus musculus BAC clone RP23-207D1 from chromosome 14, complete sequence.    44   0.007  5
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   0.29   21
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.45   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.45   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.45   1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces.    48   0.45   1
AC099715|AC099715.9 Mus musculus chromosome 10, clone RP23-346B18, complete sequence.    38   0.51   8
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        32   0.55   21

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    52   4e-05
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   6e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.003
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.004
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.007

 psg: 0.90  gvh: 0.59  alm: 0.22  top: 1.17  tms: 0.07  mit: 0.48  mip: 0.05
 nuc: 0.10  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHQ109 is cyt

>CHQ109F.Seq
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTAAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTNNNNNNNNNN

>CHQ109Z.Seq
NNNNNNNNNNGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAG
ATGGTATTNTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAG
GTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGA
TTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTC
CAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAA
TCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAA
CCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCA
ATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAG
AATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAA
CCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAA
TTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTG
TTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAA
ACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGNACAAA
AAGAAACA

>CHQ109P.Seq
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTAAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTT----------GGTTTATAATGTTTCTTCAGACATTTTAGTGGTAT
CCAATTCATTGGCAGATGGTATTNTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAG
TTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTA
AGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAA
AACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAA
AACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATC
ATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCT
CTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCAC
CACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAA
CAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTA
CAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGAC
CAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGA
GAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAG
AAAAAGAAGNACAAAAAGAAACA