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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ108
Library CH
(Link to library)
Clone ID CHQ108
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11693-1
Original site URL
Representative seq. ID CHQ108P
(Link to Original site)
Representative DNA sequence 
>CHQ108 (CHQ108Q) /CSM/CH/CHQ1-A/CHQ108Q.Seq.d/
AAAATATATTTAATTTTAAATGTATAATTATAATTAGAGCTCTGTAATAATAAGAATTTG
TGTGAATATTAAAAAATTATTAATAATAGTAATTAATAAAAAATAGATAAAAAAAAATGT
GGTCTAAATCACAATTAATTTTCTTTATAATTATTTTATATAATATATTATTTATAAATG
GAAATTTAATTGATACTGATTATTCAAAAACATTTAAACCTTTTTTAGAAACAAAGAATA
AAATTGGAAATGTAATAAAGGATCCAAAAACTGAACAAATATATGTAATTGGTGAATATC
AAACTCAACCTGAACAAGCTGATAAAACTTTTTCAGGAAATAATTTTTATACATTAGCAC
CAAAAATACCAATTCCAAATTTTGTTTTTGAAAATTCAACATCAAAAACACCAAAACCAA
CGCCAACACCATCAATTAAAACAAAATCAAAAACACCAAAACCAATTGAGTCATCATCCT
CATCATCATCAGAAACAGATGAACTTAXXXXXXXXXXGTAAAGTTCATCAACCATTTATT
AATAAAATTAAAACTTTGGAATTTAATGGTTTAATAGCTGATAAATATATTCTTGAAGCA
AAGATTAAATCAACAAGAGGTGAAAGTTTGTATTGTGGTTCAGTATCAAATAATTTAACT
TTGGCACAACCAAAAAGAATTCAAATCACTGATACCCTTATTGAAAGTATTGATTGTACA
AGAGCAAACCTTGCCAACATGACAATTACTGCAACTGGTGGTACTCAATACAATGGTAGT
TATTATGATTTTACAATATCATCGGGTGCTATCTCACACGGTCATTATTTAAATGTCTCT
TATTGGGTTGATGGAATTTATAGTTTAAACATCTCTGATTNTAAAGGTTGTGTTGCTGTT
TATAATAATATCACCATTAAAAGACCAAATAAATGTCAAGTTCATAATATCAATGGTATC
CATCCTCAATTTGGACCAAATTCAATTCAAAATGGTGGAAATGGAAATGGAAATCCTAAA
AAAGATGATAAAAATAAACTTGGTCNTAATACTTGGTCTATGTCTTGGTATTGGTATACC
TTTTATTATATTAGCCACAGTTTTAACAGTTGTACTAGTAAAGAAATTTGGCCATCGTTT
CTCAAGAACTCCTACTATGAGAAACCAACCACGTCCAAATACTGTACCAGATTTAGGGGG
TAAAATTCA
sequence update 2002.10.25
Translated Amino Acid sequence 
nifnfkciiiiral***efv*ilkny****liknr*KKMWSKSQLIFFIIILYNILFING
NLIDTDYSKTFKPFLETKNKIGNVIKDPKTEQIYVIGEYQTQPEQADKTFSGNNFYTLAP
KIPIPNFVFENSTSKTPKPTPTPSIKTKSKTPKPIESSSSSSSETDEL---

---KVHQPFINKIKTLEFNGLIADKYILEAKIKSTRGESLYCGSVSNNLTLAQPKRIQIT
DTLIESIDCTRANLANMTITATGGTQYNGSYYDFTISSGAISHGHYLNVSYWVDGIYSLN
ISDXKGCVAVYNNITIKRPNKCQVHNINGIHPQFGPNSIQNGGNGNGNPKKDDKNKLGXN
TWSMSWYWYTFYYISHSFNSCTSKEIWPSFLKNSYYEKPTTSKYCTRFRG*ns
Translated Amino Acid sequence (All Frames) 
Frame A:
kiylilnv*l*lelcnnknlcey*kiinnsn**kidkkkcglnhn*fsl*lfyiiyyl*m
ei*liliiqkhlnlf*kqriklem**riqklnkym*lvniklnlnkliklfqeiifih*h
qkyqfqilflkiqhqkhqnqrqhhqlkqnqkhqnqlshhphhhqkqmnl---

---vkfinhlliklklwnlmv**liniflkqrlnqqevkvcivvqyqii*lwhnqkefks
lipllkvlivqeqtlpt*qllqlvvlntmvvimilqyhrvlshtvii*msliglmefiv*
tslixkvvllfiiisplkdqinvkfiismvsilnldqiqfkmvememeilkkmikinlvx
ilglclgigipfiilatvltvvlvkkfghrfsrtptmrnqprpntvpdlggki

Frame B:
kyi*f*mynyn*ssviiricvnikklliivinkk*ikknvv*itinflynyfi*yiiykw
kfn*y*lfkni*tffrnke*nwkcnkgskn*tnicnw*isnst*ts**nffrk*flyist
kntnskfcf*kfnikntktnantin*nkikntktn*viiliiirnr*t---

---*ssstiy**n*nfgi*wfns**iys*skd*inkr*kfvlwfsik*fnfgttkknsnh
*ypy*ky*lykskpcqhdnycnwwysiqw*ll*fyniigcyltrslfkclllg*wnl*fk
hl*x*rlcccl**yhh*ktk*msss*yqwypssiwtkfnskwwkwkwks*kr**k*tws*
ylvyvlvlvyllly*pqf*qly**rnlaivsqelll*etnhvqilyqi*gvkf

Frame C:
nifnfkciiiiral***efv*ilkny****liknr*KKMWSKSQLIFFIIILYNILFING
NLIDTDYSKTFKPFLETKNKIGNVIKDPKTEQIYVIGEYQTQPEQADKTFSGNNFYTLAP
KIPIPNFVFENSTSKTPKPTPTPSIKTKSKTPKPIESSSSSSSETDEL---

---KVHQPFINKIKTLEFNGLIADKYILEAKIKSTRGESLYCGSVSNNLTLAQPKRIQIT
DTLIESIDCTRANLANMTITATGGTQYNGSYYDFTISSGAISHGHYLNVSYWVDGIYSLN
ISDXKGCVAVYNNITIKRPNKCQVHNINGIHPQFGPNSIQNGGNGNGNPKKDDKNKLGXN
TWSMSWYWYTFYYISHSFNSCTSKEIWPSFLKNSYYEKPTTSKYCTRFRG*ns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ108 (CHQ108Q) /CSM/CH/CHQ1-A/CHQ108Q.Seq.d/                        969   0.0
CHR849 (CHR849Q) /CSM/CH/CHR8-C/CHR849Q.Seq.d/                        926   0.0
CHQ789 (CHQ789Q) /CSM/CH/CHQ7-D/CHQ789Q.Seq.d/                        918   0.0
CHG540 (CHG540Q) /CSM/CH/CHG5-B/CHG540Q.Seq.d/                        854   0.0
CHP262 (CHP262Q) /CSM/CH/CHP2-C/CHP262Q.Seq.d/                        852   0.0
CHC660 (CHC660Q) /CSM/CH/CHC6-C/CHC660Q.Seq.d/                        835   0.0
CHH706 (CHH706Q) /CSM/CH/CHH7-A/CHH706Q.Seq.d/                        829   0.0
SFL430 (SFL430Q) /CSM/SF/SFL4-B/SFL430Q.Seq.d/                        452   e-126
CHO219 (CHO219Q) /CSM/CH/CHO2-A/CHO219Q.Seq.d/                        452   e-126
CHN891 (CHN891Q) /CSM/CH/CHN8-D/CHN891Q.Seq.d/                        452   e-126
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   8e-08  23
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-07  25
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    38   1e-07  20
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   1e-07  20
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    32   2e-07  21
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   4e-07  19
AF303741|AF303741.1 Chilo iridescent virus complete genome.        42   5e-07  10
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38   1e-06  16
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    36   2e-06  15
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    44   5e-06  19
dna update 2005.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000383_2196(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    51   9e-05
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101...    41   0.093
CP000685_974(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    39   0.35
CP000685_4021(CP000685|pid:none) Flavobacterium johnsoniae UW101...    37   1.0
AM398681_6(AM398681|pid:none) Flavobacterium psychrophilum JIP02...    37   1.3
CP000962_2506(CP000962|pid:none) Clostridium botulinum A3 str. L...    34   8.6
CP000728_2453(CP000728|pid:none) Clostridium botulinum F str. La...    34   8.6
AM412317_2524(AM412317|pid:none) Clostridium botulinum A str. AT...    34   8.6
CP000939_2443(CP000939|pid:none) Clostridium botulinum B1 str. O...    34   8.6
CP000685_1183(CP000685|pid:none) Flavobacterium johnsoniae UW101...    34   8.7
protein update 2008.11. 7
PSORT 

 psg: 1.02  gvh: 0.43  alm: 0.28  top: 0.27  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHQ108 is end
5' end seq. ID CHQ108F
5' end seq. 
>CHQ108F.Seq
AAAATATATTTAATTTTAAATGTATAATTATAATTAGAGCTCTGTAATAATAAGAATTTG
TGTGAATATTAAAAAATTATTAATAATAGTAATTAATAAAAAATAGATAAAAAAAAATGT
GGTCTAAATCACAATTAATTTTCTTTATAATTATTTTATATAATATATTATTTATAAATG
GAAATTTAATTGATACTGATTATTCAAAAACATTTAAACCTTTTTTAGAAACAAAGAATA
AAATTGGAAATGTAATAAAGGATCCAAAAACTGAACAAATATATGTAATTGGTGAATATC
AAACTCAACCTGAACAAGCTGATAAAACTTTTTCAGGAAATAATTTTTATACATTAGCAC
CAAAAATACCAATTCCAAATTTTGTTTTTGAAAATTCAACATCAAAAACACCAAAACCAA
CGCCAACACCATCAATTAAAACAAAATCAAAAACACCAAAACCAATTGAGTCATCATCCT
CATCATCATCAGAAACAGATGAACTTANNNNNNNNNN
Length of 5' end seq. 517
3' end seq. ID CHQ108Z
3' end seq. 
>CHQ108Z.Seq
NNNNNNNNNNGTAAAGTTCATCAACCATTTATTAATAAAATTAAAACTTTGGAATTTAAT
GGTTTAATAGCTGATAAATATATTCTTGAAGCAAAGATTAAATCAACAAGAGGTGAAAGT
TTGTATTGTGGTTCAGTATCAAATAATTTAACTTTGGCACAACCAAAAAGAATTCAAATC
ACTGATACCCTTATTGAAAGTATTGATTGTACAAGAGCAAACCTTGCCAACATGACAATT
ACTGCAACTGGTGGTACTCAATACAATGGTAGTTATTATGATTTTACAATATCATCGGGT
GCTATCTCACACGGTCATTATTTAAATGTCTCTTATTGGGTTGATGGAATTTATAGTTTA
AACATCTCTGATTNTAAAGGTTGTGTTGCTGTTTATAATAATATCACCATTAAAAGACCA
AATAAATGTCAAGTTCATAATATCAATGGTATCCATCCTCAATTTGGACCAAATTCAATT
CAAAATGGTGGAAATGGAAATGGAAATCCTAAAAAAGATGATAAAAATAAACTTGGTCNT
AATACTTGGTCTATGTCTTGGTATTGGTATACCTTTTATTATATTAGCCACAGTTTTAAC
AGTTGTACTAGTAAAGAAATTTGGCCATCGTTTCTCAAGAACTCCTACTATGAGAAACCA
ACCACGTCCAAATACTGTACCAGATTTAGGGGGTAAAATTCA
Length of 3' end seq. 702
Connected seq. ID CHQ108P
Connected seq. 
>CHQ108P.Seq
AAAATATATTTAATTTTAAATGTATAATTATAATTAGAGCTCTGTAATAATAAGAATTTG
TGTGAATATTAAAAAATTATTAATAATAGTAATTAATAAAAAATAGATAAAAAAAAATGT
GGTCTAAATCACAATTAATTTTCTTTATAATTATTTTATATAATATATTATTTATAAATG
GAAATTTAATTGATACTGATTATTCAAAAACATTTAAACCTTTTTTAGAAACAAAGAATA
AAATTGGAAATGTAATAAAGGATCCAAAAACTGAACAAATATATGTAATTGGTGAATATC
AAACTCAACCTGAACAAGCTGATAAAACTTTTTCAGGAAATAATTTTTATACATTAGCAC
CAAAAATACCAATTCCAAATTTTGTTTTTGAAAATTCAACATCAAAAACACCAAAACCAA
CGCCAACACCATCAATTAAAACAAAATCAAAAACACCAAAACCAATTGAGTCATCATCCT
CATCATCATCAGAAACAGATGAACTTA----------GTAAAGTTCATCAACCATTTATT
AATAAAATTAAAACTTTGGAATTTAATGGTTTAATAGCTGATAAATATATTCTTGAAGCA
AAGATTAAATCAACAAGAGGTGAAAGTTTGTATTGTGGTTCAGTATCAAATAATTTAACT
TTGGCACAACCAAAAAGAATTCAAATCACTGATACCCTTATTGAAAGTATTGATTGTACA
AGAGCAAACCTTGCCAACATGACAATTACTGCAACTGGTGGTACTCAATACAATGGTAGT
TATTATGATTTTACAATATCATCGGGTGCTATCTCACACGGTCATTATTTAAATGTCTCT
TATTGGGTTGATGGAATTTATAGTTTAAACATCTCTGATTNTAAAGGTTGTGTTGCTGTT
TATAATAATATCACCATTAAAAGACCAAATAAATGTCAAGTTCATAATATCAATGGTATC
CATCCTCAATTTGGACCAAATTCAATTCAAAATGGTGGAAATGGAAATGGAAATCCTAAA
AAAGATGATAAAAATAAACTTGGTCNTAATACTTGGTCTATGTCTTGGTATTGGTATACC
TTTTATTATATTAGCCACAGTTTTAACAGTTGTACTAGTAAAGAAATTTGGCCATCGTTT
CTCAAGAACTCCTACTATGAGAAACCAACCACGTCCAAATACTGTACCAGATTTAGGGGG
TAAAATTCA
Length of connected seq. 1199
Full length Seq ID -
Full length Seq. -
Length of full length seq. -