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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ107
Library CH
(Link to library)
Clone ID CHQ107
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13127-1|Contig-U15723-1
Original site URL
Representative seq. ID CHQ107P
(Link to Original site)
Representative DNA sequence 
>CHQ107 (CHQ107Q) /CSM/CH/CHQ1-A/CHQ107Q.Seq.d/
AAAACTATGATGAAGAAAACAATGATGAAGAAATTATTATAGAAAGAAAAAAACCAAGAA
GTGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATXXXXXXXXXXTCAACGAGT
GGTCGATGGATAGAAATGTAAAAAAATTATATTTTTTACTCCCAATGGAATCACATTCAA
ACTTTTTGTGANGAATGTGATAATTATAGATGTCAAAAAAAAAAGATGAGGAGAGGGAAA
GAGAGAGAGAGAGAAAGAATGGCAGATACAGAAGAAAAAAATAATACCGATATTATTCNN
AAATATAATAACCGAGACTGAATCAGGATTGGTTCCAGTTTCAAACCCTGTGGCGGTGAC
ATCTGGCTCGAAAGAAAATCCAATTAATATTGAGTCATTTGTTAAAATGATGTCAACCAT
GCAAGAGAAAATGATGTCAACCATACAAGAACTTACTCAAACAATTGCTAATAATAATAA
TAATAATAATAGTAATAATAATAATAATAATAATACAACAACAACAACAACCAACACAAA
TAACACTCTACCCCCAACAAGTAGTATCGATTTATCACAAATTCCTCAACCATATCAACA
TTTACAACTTCAACAATTACAACAACTTCAACAATTACAACAACAAATTCAAGCAGCTCA
ACAACAAGCACAACAACAAATTTTACAAAAAAGTTTACTAAATGTCCTCAATAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
NYDEENNDEEIIIERKKPRSENNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---

---NEWSMDRNVKKLYFLLPMESHSNFL*xm**l*mskkkdeererererkngryrrkk*
yryysxi**prlnqdwfqfqtlwr*hlarkkiqlilshllk*cqpckrk*cqpyknllkq
lliiiiiiiviiiiiiiqqqqqptqitlypqqvvsiyhkflnhiniynfnnynnfnnynn
kfkqlnnkhnnkfykkvy*mssik
Translated Amino Acid sequence (All Frames) 
Frame A:
ktmmkktmmkkll*keknqevkiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii---

---stsgrwiem*knyifysqwnhiqtfcxecdnyrcqkkkmrrgkererermadteekn
ntdiixkynnrd*irigssfkpcggdiwlerksn*y*vic*ndvnharendvnhtrtysn
nc***************ynnnnnqhk*hstpnk*yrfitnsstistfttstitttstitt
tnssssttstttnftkkftkcpq*k

Frame B:
kl**rkq**rnyyrkkktkk*k*******************************---

---qrvvdg*kckkiifftpngitfklfvxnviiidvkkkr*gegkrerekewqiqkkki
ipilfxniitetesglvpvsnpvavtsgskenpiniesfvkmmstmqekmmstiqeltqt
iannnnnnnsnnnnnnnttttttntnntlpptssidlsqipqpyqhlqlqqlqqlqqlqq
qiqaaqqqaqqqilqksllnvlnkn

Frame C:
NYDEENNDEEIIIERKKPRSENNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---

---NEWSMDRNVKKLYFLLPMESHSNFL*xm**l*mskkkdeererererkngryrrkk*
yryysxi**prlnqdwfqfqtlwr*hlarkkiqlilshllk*cqpckrk*cqpyknllkq
lliiiiiiiviiiiiiiqqqqqptqitlypqqvvsiyhkflnhiniynfnnynnfnnynn
kfkqlnnkhnnkfykkvy*mssik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ107 (CHQ107Q) /CSM/CH/CHQ1-A/CHQ107Q.Seq.d/                        371   e-101
SFD388 (SFD388Q) /CSM/SF/SFD3-D/SFD388Q.Seq.d/                         36   0.77
VHN140 (VHN140Q) /CSM/VH/VHN1-B/VHN140Q.Seq.d/                         34   3.0
SHB419 (SHB419Q) /CSM/SH/SHB4-A/SHB419Q.Seq.d/                         34   3.0
SFJ263 (SFJ263Q) /CSM/SF/SFJ2-C/SFJ263Q.Seq.d/                         34   3.0
SFI587 (SFI587Q) /CSM/SF/SFI5-D/SFI587Q.Seq.d/                         34   3.0
CHO783 (CHO783Q) /CSM/CH/CHO7-D/CHO783Q.Seq.d/                         34   3.0
CHJ274 (CHJ274Q) /CSM/CH/CHJ2-D/CHJ274Q.Seq.d/                         34   3.0
CHH326 (CHH326Q) /CSM/CH/CHH3-B/CHH326Q.Seq.d/                         34   3.0
CHG367 (CHG367Q) /CSM/CH/CHG3-C/CHG367Q.Seq.d/                         34   3.0
own update 2004. 8.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    78   3e-10  1
AF499596|AF499596.1 Phthorimaea operculella granulovirus, complete genome.    44   4.3    1
AC034215|AC034215.4 Homo sapiens chromosome 5 clone CTD-2001K4, complete sequence.    44   4.3    1
BZ731516|BZ731516.1 OGEDK16TM ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0251C07, DNA sequence.    44   4.3    1
AC024466|AC024466.3 Homo sapiens chromosome 14 clone RP11-481E3 map 14, WORKING DRAFT SEQUENCE, 21 unordered pieces.    44   4.3    1
BQ635258|BQ635258.1 NXRV078_A08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV078_A08 5', mRNA sequence.    44   4.3    1
AC074132|AC074132.5 Homo sapiens chromosome 5 clone CTD-2266L18, complete sequence.    44   4.3    1
AL355101|AL355101.2 Human chromosome 14 DNA sequence BAC R-686H21 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    44   4.3    1
AC144408|AC144408.3 Mus musculus BAC clone RP24-326P8 from chromosome 16, complete sequence.    42   17     1
AP000604|AP000604.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSA6.    42   17     1
dna update 2005.10.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 584,027,541
protein update 2009. 4.11
PSORT 

 psg: 0.75  gvh: -0.13  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHQ107 is nuc
5' end seq. ID CHQ107F
5' end seq. 
>CHQ107F.Seq
AAAACTATGATGAAGAAAACAATGATGAAGAAATTATTATAGAAAGAAAAAAACCAAGAA
GTGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATNNNNNNNNNN
Length of 5' end seq. 171
3' end seq. ID CHQ107Z
3' end seq. 
>CHQ107Z.Seq
NNNNNNNNNNTCAACGAGTGGTCGATGGATAGAAATGTAAAAAAATTATATTTTTTACTC
CCAATGGAATCACATTCAAACTTTTTGTGANGAATGTGATAATTATAGATGTCAAAAAAA
AAAGATGAGGAGAGGGAAAGAGAGAGAGAGAGAAAGAATGGCAGATACAGAAGAAAAAAA
TAATACCGATATTATTCNNAAATATAATAACCGAGACTGAATCAGGATTGGTTCCAGTTT
CAAACCCTGTGGCGGTGACATCTGGCTCGAAAGAAAATCCAATTAATATTGAGTCATTTG
TTAAAATGATGTCAACCATGCAAGAGAAAATGATGTCAACCATACAAGAACTTACTCAAA
CAATTGCTAATAATAATAATAATAATAATAGTAATAATAATAATAATAATAATACAACAA
CAACAACAACCAACACAAATAACACTCTACCCCCAACAAGTAGTATCGATTTATCACAAA
TTCCTCAACCATATCAACATTTACAACTTCAACAATTACAACAACTTCAACAATTACAAC
AACAAATTCAAGCAGCTCAACAACAAGCACAACAACAAATTTTACAAAAAAGTTTACTAA
ATGTCCTCAATAAAAAT
Length of 3' end seq. 617
Connected seq. ID CHQ107P
Connected seq. 
>CHQ107P.Seq
AAAACTATGATGAAGAAAACAATGATGAAGAAATTATTATAGAAAGAAAAAAACCAAGAA
GTGAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAAT----------TCAACGAGT
GGTCGATGGATAGAAATGTAAAAAAATTATATTTTTTACTCCCAATGGAATCACATTCAA
ACTTTTTGTGANGAATGTGATAATTATAGATGTCAAAAAAAAAAGATGAGGAGAGGGAAA
GAGAGAGAGAGAGAAAGAATGGCAGATACAGAAGAAAAAAATAATACCGATATTATTCNN
AAATATAATAACCGAGACTGAATCAGGATTGGTTCCAGTTTCAAACCCTGTGGCGGTGAC
ATCTGGCTCGAAAGAAAATCCAATTAATATTGAGTCATTTGTTAAAATGATGTCAACCAT
GCAAGAGAAAATGATGTCAACCATACAAGAACTTACTCAAACAATTGCTAATAATAATAA
TAATAATAATAGTAATAATAATAATAATAATAATACAACAACAACAACAACCAACACAAA
TAACACTCTACCCCCAACAAGTAGTATCGATTTATCACAAATTCCTCAACCATATCAACA
TTTACAACTTCAACAATTACAACAACTTCAACAATTACAACAACAAATTCAAGCAGCTCA
ACAACAAGCACAACAACAAATTTTACAAAAAAGTTTACTAAATGTCCTCAATAAAAAT
Length of connected seq. 768
Full length Seq ID -
Full length Seq. -
Length of full length seq. -