NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHQ103
Library CH
(Link to library)
Clone ID CHQ103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHQ103P
(Link to Original site)
Representative DNA sequence 
>CHQ103 (CHQ103Q) /CSM/CH/CHQ1-A/CHQ103Q.Seq.d/
ATATGTATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAA
TATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATT
ATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGA
TCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTA
TGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTA
TAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGG
ATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGA
AACCTATGAAAAGACATTGGCTTGTCCACCXXXXXXXXXXATGCTTTTGGTGCAACTAAA
GGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCA
ATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACC
TCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATT
ACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATA
AATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTA
ATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTC
AAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAA
GCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGAT
GCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTACTTCTTCTGATGCTGGGG
TTATTATTTTAATGGTTGTTCATTGGTATTATTCCAAAAAAATNNNATANAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
yvyfflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYD
QRILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDG
LTQRTTYEFTFTNPKDYYFETYEKTLACP---

---AFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTF
GKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQ
TVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYV
TSLLLLMLGLLF*wlfigiipkkxxxk
Translated Amino Acid sequence (All Frames) 
Frame A:
icifffvy*kiliivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*
styfgikrkmlfrfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*w
instynl*iyiyqskrlll*nl*kdiglst---

---mllvqlkvvvilllqlvsitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqp
lvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqv
klypiqmvisnlklisvqiiiv*fllhssklvlplq*emliqliqiqivmlsyqllimfm
sllyff*cwgyyfngcslvlfqknxixk

Frame B:
yvyfflfikkf*llyiiflniyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYD
QRILALKGKCYLDSNKNALYDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDG
LTQRTTYEFTFTNPKDYYFETYEKTLACP---

---cfwcn*rws*yycynwfrll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnl
w*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnks
ncirfkwlfqi*s*fqfklllcnsccilpswffhynekc*snsskyk**cflinc**clc
hfftssdagviilmvvhwyyskkxxxkk

Frame C:
myiffcllknfnyci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkymi
nvfwh*kenvi*iqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd
*lnvqlmnlhlpiqkiitlkpmkrhwlvh---

---AFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTF
GKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQ
TVSDSNGYFKFEVDFSSNYYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYV
TSLLLLMLGLLF*wlfigiipkkxxxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHQ103 (CHQ103Q) /CSM/CH/CHQ1-A/CHQ103Q.Seq.d/                       1750   0.0
SHL651 (SHL651Q) /CSM/SH/SHL6-C/SHL651Q.Seq.d/                       1166   0.0
SHL582 (SHL582Q) /CSM/SH/SHL5-D/SHL582Q.Seq.d/                       1166   0.0
SHL103 (SHL103Q) /CSM/SH/SHL1-A/SHL103Q.Seq.d/                       1166   0.0
SHK816 (SHK816Q) /CSM/SH/SHK8-A/SHK816Q.Seq.d/                       1166   0.0
SHK708 (SHK708Q) /CSM/SH/SHK7-A/SHK708Q.Seq.d/                       1166   0.0
SHK254 (SHK254Q) /CSM/SH/SHK2-C/SHK254Q.Seq.d/                       1166   0.0
SHJ670 (SHJ670Q) /CSM/SH/SHJ6-C/SHJ670Q.Seq.d/                       1166   0.0
SHH111 (SHH111Q) /CSM/SH/SHH1-A/SHH111Q.Seq.d/                       1166   0.0
SHG836 (SHG836Q) /CSM/SH/SHG8-B/SHG836Q.Seq.d/                       1166   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC162649|AC162649.2 Bos taurus clone CH240-122O2, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    38   0.033  6
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    34   0.096  9
AC162633|AC162633.2 Bos taurus clone CH240-121O22, *** SEQUENCING IN PROGRESS ***, 73 unordered pieces.    36   0.16   11
AC163128|AC163128.2 Bos taurus clone CH240-127P19, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces.    40   0.20   8
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   0.29   25
BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.38   1
AC151193|AC151193.2 Bos taurus clone CH240-136K18, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces.    32   0.42   8
AC156216|AC156216.2 Bos taurus clone CH240-43E7, *** SEQUENCING IN PROGRESS ***, 53 unordered pieces.    38   0.47   5
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        32   0.54   22
BA000018|BA000018.3 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome.    38   0.77   32
dna update 2005.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   1e-08
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    61   6e-08
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   3e-07
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    59   4e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   2e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   2e-05
protein update 2009. 4.11
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.13  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for CHQ103 is mit
5' end seq. ID CHQ103F
5' end seq. 
>CHQ103F.Seq
ATATGTATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAA
TATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATT
ATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGA
TCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTA
TGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTA
TAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGG
ATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGA
AACCTATGAAAAGACATTGGCTTGTCCACCNNNNNNNNNN
Length of 5' end seq. 460
3' end seq. ID CHQ103Z
3' end seq. 
>CHQ103Z.Seq
NNNNNNNNNNATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGT
TTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAA
CAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACC
TTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAA
TATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAA
CCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGT
CAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTAT
TATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCT
GATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTAT
GTCACTTCTTTACTTCTTCTGATGCTGGGGTTATTATTTTAATGGTTGTTCATTGGTATT
ATTCCAAAAAAATNNNATANAAAAAA
Length of 3' end seq. 626
Connected seq. ID CHQ103P
Connected seq. 
>CHQ103P.Seq
ATATGTATATTTTTTTTTGTTTATTAAAAAATTTTAATTATTGTATATAATATTTTTAAA
TATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTCATT
ATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGA
TCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTA
TGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTA
TAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGG
ATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGA
AACCTATGAAAAGACATTGGCTTGTCCACC----------ATGCTTTTGGTGCAACTAAA
GGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCA
ATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACC
TCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATT
ACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATA
AATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTA
ATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTC
AAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAA
GCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGAT
GCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTACTTCTTCTGATGCTGGGG
TTATTATTTTAATGGTTGTTCATTGGTATTATTCCAAAAAAATNNNATANAAAAAA
Length of connected seq. 1066
Full length Seq ID -
Full length Seq. -
Length of full length seq. -