CHP896 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHP896
Library	CH (Link to library)
Clone ID	CHP896 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16351-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHP8-D/CHP896Q.Seq.d/
Representative seq. ID	CHP896P (Link to Original site)
Representative DNA sequence	>CHP896 (CHP896Q) /CSM/CH/CHP8-D/CHP896Q.Seq.d/ ACTGTTGGCCTACTGGNATTTACATTAAAGTGTCGTACCACTATCACATACCATCTAATC TAGTGACTTTAAATAGTAGTAATTATTTCTTTGTAGGAACTACACTATTTACAATTTATC AATAAAAAAATAAAAAAATAAATAATAAAAAAAATAAAAAATAATCAAAAAGACTTTTAT TTTTCGTATCGTGTAATAAATAAATATTGATATCGATAATAGTAATCAATCCTTTGAGGA GGAGAAGCGCACCTGTGTGATTTTTAACAACAAATAAACAATATACCAAAAATAAAAAAA ATAAAAAATAAAAAACAATAAATTATAATAATAATAATAAAAAAAACAATCAAATCAGAA ACCTTTATTTAATTTAAATAATTTTAAATTTTTTTATTTTTTTTATTTTATTTTATTTCA AAACACTTTATATATATTTTTTTTAATTTTAATTTGTTTTTTTAAATTTAATTCATCATA ATTAAATCTTAAACCAAAAATAAATTTATTTTTAAATCTTTAAAATAATTATTTTATTTA TTTATTTATTTATTTTTAAACACAAACACACACACAAAAACACACACACACACACACACA CAAAAAXXXXXXXXXXTGTTTCAAAAGTTGATCATATTAAAAAGGATCCAAATGGTGTTT GTGAAAAGAAACAAACCTTTATCGATATCCTTACCGACCGTTTATCATCTTTAGAAAACT TACATTTAACACAATCTGCATTGTTATCAAATATGTTAAAAGAAAGAGGTATACCCGAAT CTGAATATTCATTTTCTGAATATTCTGAACCTGAATTAATATCATGTGCATTTTCAACTT CACCACCTTCTTCACCATTTTCAATTAGTGGTGGTGGCGGCAGTGGTGGTATTCCATCTC AAAGTGGTATAATTAAAAAACATAAAAAACCATCTGGATCATCAGGATATGGAGATAATA AAAATACTGCTGAAAGATTTTTAGAATGCTTTAATAGAGTAATTAAAGTTTATAAAGAAC ATTATGGAAAGAAATCTTTTGAACTTTCAAAATTCATAAGTAGTTTAGATAATGATGAAA AAAATATATTGGTTGATCTATTAGAATCTTTTACTTTTGATGAATCCTCTCAAGTAAAAT CATTAGATAATAATGATCATTGTGAAGATTGTAATTGTGAAACTTGTCCATATAAACAAC AAGCTGAACAATTTATGTTATTATNCTCCTGTAATTTGTTTCCCTTCACCTGCAATTAAA TNCTTCAAATAATACAAATAATACAAATAAAACAAATAATACAAATAATAATACTGTTGT AACA
sequence update	2002.10.25
Translated Amino Acid sequence	cwptgiyikvsyhyhipsnlvtlnssnyffvgttlftiyqknkkinnkknkkskrllf fvscnkilisiivinplrrrsapvflttnkqytknkknkkktinynnnnkknnqirn lyliiilnffiffilfyfktlyiyffffvflnlihhnilnqkiyfIFKIIILFI YLFIFKHKHTHKNTHTHTHTK--- ---VSKVDHIKKDPNGVCEKKQTFIDILTDRLSSLENLHLTQSALLSNMLKERGIPESEY SFSEYSEPELISCAFSTSPPSSPFSISGGGGSGGIPSQSGIIKKHKKPSGSSGYGDNKNT AERFLECFNRVIKVYKEHYGKKSFELSKFISSLDNDEKNILVDLLESFTFDESSQVKSLD NNDHCEDCNCETCPYKQQAEQFMLLXSCNLFPFTCNxlqiiqiiqikqiiqiiill*
Translated Amino Acid sequence (All Frames)	Frame A: tvgllxftlkcrttityhli*livviislelhylqfinkkikkiikkiknnqkdfy fsyrvinkyyr*silggeahlcdfqqinnipkikkiknkkqiiiiiikktikse tfifkfiflfflfyfiskhfiyiffnfnlffifiiikstknkfifkslklfyl fiylflntnthtkthththtqk--- ---cfkssykgskwclketnlyrypyrpfiifrkltfnticivikyvkrkrytrii fififtinimcifnfttfftifnwwwrqwwysiskwynktktiwiiriwrky ckifrml*snslrtlwkeiftfkihkfr*kkyigsirifyfilsskiir slrllnlsittstiyvixllfvslhlqlnxsnntnntnktnntnnntvvt Frame B: llaywxlhsvvplshtissdfk*lflcrnytiynlsikkknk*kkkiikktfi friv*inididnsnqsfeeekrtcvifnnktiyqkkkkiknnkl****kkqsnqk plfnlnnfkffyffyfilfqntlyifflilicffkfnsslnlkpkinlflnlnnyfiy lfiyftqthtqkhthththk--- ---VSKVDHIKKDPNGVCEKKQTFIDILTDRLSSLENLHLTQSALLSNMLKERGIPESEY SFSEYSEPELISCAFSTSPPSSPFSISGGGGSGGIPSQSGIIKKHKKPSGSSGYGDNKNT AERFLECFNRVIKVYKEHYGKKSFELSKFISSLDNDEKNILVDLLESFTFDESSQVKSLD NNDHCEDCNCETCPYKQQAEQFMLLXSCNLFPFTCNxlqiiqiiqikqiiqiiill Frame C: cwptgiyikvsyhyhipsnlvtlnssnyffvgttlftiyqknkkinnkknkkskrllf fvscnkilisiivinplrrrsapvflttnkqytknkknkkktinynnnnkknnqirn lyliiilnffiffilfyfktlyiyffffvflnlihhnilnqkiyfIFKIIILFI YLFIFKHKHTHKNTHTHTHTK--- ---fqkliilkriqmvfvkrnkplsislptvyhlktyihnlhcyqickkevypnlni hflnilnlnyhvhfqlhhllhhfqlvvvaavvvfhlkvvlkniknhldhqdmeiikil lkdfnalielkfiknimernllnfqnsvvimmkkiywliynllllmnplknhi imiivkivivklvhinnklnnlcyyxpvicfpspaikxfkykyknkyk*yccn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHP896 (CHP896Q) /CSM/CH/CHP8-D/CHP896Q.Seq.d/ 591 e-167 CHL357 (CHL357Q) /CSM/CH/CHL3-C/CHL357Q.Seq.d/ 591 e-167 AHM345 (AHM345Q) /CSM/AH/AHM3-B/AHM345Q.Seq.d/ 591 e-167 AFM622 (AFM622Q) /CSM/AF/AFM6-A/AFM622Q.Seq.d/ 591 e-167 SSA841 (SSA841Q) /CSM/SS/SSA8-B/SSA841Q.Seq.d/ 585 e-166 CHH172 (CHH172Q) /CSM/CH/CHH1-C/CHH172Q.Seq.d/ 585 e-166 AHE417 (AHE417Q) /CSM/AH/AHE4-A/AHE417Q.Seq.d/ 585 e-166 AHA385 (AHA385Q) /CSM/AH/AHA3-D/AHA385Q.Seq.d/ 585 e-166 SFA609 (SFA609Q) /CSM/SF/SFA6-A/SFA609Q.Seq.d/ 581 e-164 CHS406 (CHS406Q) /CSM/CH/CHS4-A/CHS406Q.Seq.d/ 581 e-164
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AL049181\|AL049181.4 Plasmodium falciparum DNA * SEQUENCING IN PROGRESS * from MAL13P4. 38 2e-04 14 AL031745\|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 38 5e-04 19 CR382401\|CR382401.1 Plasmodium falciparum chromosome 6, complete sequence; segment 4/5. 38 6e-04 16 DD041861\|DD041861.1 Light-driven energy generation using proteorhodopsin. 36 0.006 8 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.027 18 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.073 17 AE014832\|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 38 0.098 18 AC115599\|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 36 0.12 10 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 38 0.12 21 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 36 0.25 13
dna update	2005.10.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF020285_1(AF020285\|pid:none) Dictyostelium discoideum DG1062 ge... 42 0.061 CP000879_287(CP000879\|pid:none) Petrotoga mobilis SJ95, complete... 37 1.5 AM910988_67(AM910988\|pid:none) Plasmodium knowlesi strain H chro... 36 3.4 AY501886_1(AY501886\|pid:none) Plasmodium vivax strain Thailand-N... 35 4.4 CP001140_772(CP001140\|pid:none) Desulfurococcus kamchatkensis 12... 35 5.7 AM270196_50(AM270196\|pid:none) Aspergillus niger contig An09c007... 35 7.5 AE010299_2657(AE010299\|pid:none) Methanosarcina acetivorans str.... 34 9.8 CP001191_1243(CP001191\|pid:none) Rhizobium leguminosarum bv. tri... 34 9.8
protein update	2009. 4.11
PSORT	psg: 0.98 gvh: 0.33 alm: 0.33 top: 0.80 tms: 0.00 mit: 0.36 mip: 0.00 nuc: 0.05 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: mitochondrial 28.0 %: cytoplasmic 24.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: plasma membrane >> prediction for CHP896 is mit
5' end seq. ID	CHP896F
5' end seq.	>CHP896F.Seq ACTGTTGGCCTACTGGNATTTACATTAAAGTGTCGTACCACTATCACATACCATCTAATC TAGTGACTTTAAATAGTAGTAATTATTTCTTTGTAGGAACTACACTATTTACAATTTATC AATAAAAAAATAAAAAAATAAATAATAAAAAAAATAAAAAATAATCAAAAAGACTTTTAT TTTTCGTATCGTGTAATAAATAAATATTGATATCGATAATAGTAATCAATCCTTTGAGGA GGAGAAGCGCACCTGTGTGATTTTTAACAACAAATAAACAATATACCAAAAATAAAAAAA ATAAAAAATAAAAAACAATAAATTATAATAATAATAATAAAAAAAACAATCAAATCAGAA ACCTTTATTTAATTTAAATAATTTTAAATTTTTTTATTTTTTTTATTTTATTTTATTTCA AAACACTTTATATATATTTTTTTTAATTTTAATTTGTTTTTTTAAATTTAATTCATCATA ATTAAATCTTAAACCAAAAATAAATTTATTTTTAAATCTTTAAAATAATTATTTTATTTA TTTATTTATTTATTTTTAAACACAAACACACACACAAAAACACACACACACACACACACA CAAAAANNNNNNNNNN
Length of 5' end seq.	616
3' end seq. ID	CHP896Z
3' end seq.	>CHP896Z.Seq NNNNNNNNNNTGTTTCAAAAGTTGATCATATTAAAAAGGATCCAAATGGTGTTTGTGAAA AGAAACAAACCTTTATCGATATCCTTACCGACCGTTTATCATCTTTAGAAAACTTACATT TAACACAATCTGCATTGTTATCAAATATGTTAAAAGAAAGAGGTATACCCGAATCTGAAT ATTCATTTTCTGAATATTCTGAACCTGAATTAATATCATGTGCATTTTCAACTTCACCAC CTTCTTCACCATTTTCAATTAGTGGTGGTGGCGGCAGTGGTGGTATTCCATCTCAAAGTG GTATAATTAAAAAACATAAAAAACCATCTGGATCATCAGGATATGGAGATAATAAAAATA CTGCTGAAAGATTTTTAGAATGCTTTAATAGAGTAATTAAAGTTTATAAAGAACATTATG GAAAGAAATCTTTTGAACTTTCAAAATTCATAAGTAGTTTAGATAATGATGAAAAAAATA TATTGGTTGATCTATTAGAATCTTTTACTTTTGATGAATCCTCTCAAGTAAAATCATTAG ATAATAATGATCATTGTGAAGATTGTAATTGTGAAACTTGTCCATATAAACAACAAGCTG AACAATTTATGTTATTATNCTCCTGTAATTTGTTTCCCTTCACCTGCAATTAAATNCTTC AAATAATACAAATAATACAAATAAAACAAATAATACAAATAATAATACTGTTGTAACA
Length of 3' end seq.	718
Connected seq. ID	CHP896P
Connected seq.	>CHP896P.Seq ACTGTTGGCCTACTGGNATTTACATTAAAGTGTCGTACCACTATCACATACCATCTAATC TAGTGACTTTAAATAGTAGTAATTATTTCTTTGTAGGAACTACACTATTTACAATTTATC AATAAAAAAATAAAAAAATAAATAATAAAAAAAATAAAAAATAATCAAAAAGACTTTTAT TTTTCGTATCGTGTAATAAATAAATATTGATATCGATAATAGTAATCAATCCTTTGAGGA GGAGAAGCGCACCTGTGTGATTTTTAACAACAAATAAACAATATACCAAAAATAAAAAAA ATAAAAAATAAAAAACAATAAATTATAATAATAATAATAAAAAAAACAATCAAATCAGAA ACCTTTATTTAATTTAAATAATTTTAAATTTTTTTATTTTTTTTATTTTATTTTATTTCA AAACACTTTATATATATTTTTTTTAATTTTAATTTGTTTTTTTAAATTTAATTCATCATA ATTAAATCTTAAACCAAAAATAAATTTATTTTTAAATCTTTAAAATAATTATTTTATTTA TTTATTTATTTATTTTTAAACACAAACACACACACAAAAACACACACACACACACACACA CAAAAA----------TGTTTCAAAAGTTGATCATATTAAAAAGGATCCAAATGGTGTTT GTGAAAAGAAACAAACCTTTATCGATATCCTTACCGACCGTTTATCATCTTTAGAAAACT TACATTTAACACAATCTGCATTGTTATCAAATATGTTAAAAGAAAGAGGTATACCCGAAT CTGAATATTCATTTTCTGAATATTCTGAACCTGAATTAATATCATGTGCATTTTCAACTT CACCACCTTCTTCACCATTTTCAATTAGTGGTGGTGGCGGCAGTGGTGGTATTCCATCTC AAAGTGGTATAATTAAAAAACATAAAAAACCATCTGGATCATCAGGATATGGAGATAATA AAAATACTGCTGAAAGATTTTTAGAATGCTTTAATAGAGTAATTAAAGTTTATAAAGAAC ATTATGGAAAGAAATCTTTTGAACTTTCAAAATTCATAAGTAGTTTAGATAATGATGAAA AAAATATATTGGTTGATCTATTAGAATCTTTTACTTTTGATGAATCCTCTCAAGTAAAAT CATTAGATAATAATGATCATTGTGAAGATTGTAATTGTGAAACTTGTCCATATAAACAAC AAGCTGAACAATTTATGTTATTATNCTCCTGTAATTTGTTTCCCTTCACCTGCAATTAAA TNCTTCAAATAATACAAATAATACAAATAAAACAAATAATACAAATAATAATACTGTTGT AACA
Length of connected seq.	1314
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas