CHP894 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHP894
Library	CH (Link to library)
Clone ID	CHP894 (Link to dictyBase)
Atlas ID	-
NBRP ID	G00270
dictyBase ID	DDB0218469
Link to Contig	Contig-U15082-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHP8-D/CHP894Q.Seq.d/
Representative seq. ID	CHP894P (Link to Original site)
Representative DNA sequence	>CHP894 (CHP894Q) /CSM/CH/CHP8-D/CHP894Q.Seq.d/ CTGTTGGCCTACTGGNATTTTATAAAAACCCTGNCACTTTAAAAAAAAAGCCACCTTATT TTCTTTAAATAATAATTAATAATCTTAATAGTATAATAAAATGACATTTGTTAAAGGNGT TTGTTTCGATCCAGCTCAAGCAAAAAAATCAGTTTTAGATGTTAAAGAAACTCTTTTAAA TTTAGAAACCCAAGTAAAGAAAACTTCATTATCAAAAGATGAAGCTGTAGATGCTTATAA AATTTATGAAACTTTACCACTCACTTTCCAAATCAATTGGTCTATTGCAGGTGAAGATGC TAATGAAAACCAAAAAGTTGCAGATTTCTGTAGAGACAAATTAAATGAATTAAATCATGT CCATAATTTTACATCATCTAAAATTCCAAGAGCTTTCAATGCTGATAATAGTTATTAAAT ATATATGAATAATAATAATAATAATAATAATAATAATCAATAATCAATAATAATTAATAA TAATAATTCTTTAAAATAGAAATTGTTGTCTACTTGTAAATATATAAATAAAATAAACCA AATCTTTAAACACTTAANAAAAAAAXXXXXXXXXXAAANNCAAAGGCCNCCTTATNTTCT NTNAATNNNAATTAATGATCTTAATAGTATNATAAAATGACATTTGTTAAAGGTGTTTGT TTCGATCCAGCTCAAGCAAAGAAATCAGTTTTAGATGTTAAAGAAACTCTTTTAAATTTA GAAACCCAAGTAAAGAAAACTTCATTATCAAAAGATGAAGCTGTAGATGCTTATAAAATT TATGAAACTTTACCACTCACTTTCCAAATCAATTGGTCTATTGCAGGTGAAGATGCTAAT GAAAACCAAAAAGTTGCAGATTTCTGTAGAGACAAATTAAATGAATTAAATCATGTCCAT AATTTTACATCATCTAAAATTCCAAGAGCTTTCAATGCTGATAATAGTTATTAAATATAT ATGAATAATAATAATAATAATAATAATAATAATCAATAATCAATAATAATTAATAATAAT ANTACATTAAAATAGAAATT
sequence update	2002.10.25
Translated Amino Acid sequence	cwptgilkpxhfkkkatlfslnnnsynkmtfvkgvcfdpaqakksvldvketlln letqvkktslskdeavdaykiyetlpltfqinwsiagedanenqkvadfcrdklnelnhv hnftsskiprafnadnsyiymnnnnnnnnnnqsiiinnnnslkKLLSTCKYINKINQ IFKHLXKK--- ---XQRPPYXLXXXINDLNSXIKhllkvfvsiqlkqrnqfmlkklfikpkrklhy qkmklmlikfmklyhslsksigllqvkmlmktkklqisvetnmnimsiilhhlkfqe lsmliivikyiiiiiiiiiiinnqliiixhnrn
Translated Amino Acid sequence (All Frames)	Frame A: llaywxfiktlxlkkshliffkliilivndicrxlfrsssskkisfrcrnsfk frnpskenfiikrscrclnlnftthfpnqlvycrrckpkscrflrqikiksc pfyiinsksfqcllniye*****siinnn*ffkieivvyliyknkp nltlxkk--- ---kxkgxlxfxxxxlmilivxndicrclfrsssskeisfrcrnsfkfrnpskenfi ikrscrclnlnftthfpnqlvycrrckpkscrflrqikikscpfyiinsk sfqcllniye*****siinnnxyikiei Frame B: cwptgilkpxhfkkkatlfslnnnsynkmtfvkgvcfdpaqakksvldvketlln letqvkktslskdeavdaykiyetlpltfqinwsiagedanenqkvadfcrdklnelnhv hnftsskiprafnadnsyiymnnnnnnnnnnqsiiinnnnslkKLLSTCKYINKINQ IFKHLXKK--- ---xxkaxlxsxnxnsyxkmtfvkgvcfdpaqakksvldvketllnletqvkktsl skdeavdaykiyetlpltfqinwsiagedanenqkvadfcrdklnelnhvhnftsskipr afnadnsyiymnnnnnnnnnnqsiiinnnxtlkk Frame C: vgllxfyknpxtlkkkppyfliiinnlnsiikhllkxfvsiqlkqknqfmlkklfi kpkrklhyqkmklmlikfmklyhslsksigllqvkmlmktkklqisvetnmnims iilhhlkfqelsmliivikyiiiiiiiiiiinnq*liiiilnrnccllvniiktk slntxk--- ---XQRPPYXLXXXINDLNSXIKhllkvfvsiqlkqrnqfmlkklfikpkrklhy qkmklmlikfmklyhslsksigllqvkmlmktkklqisvetnmnimsiilhhlkfqe lsmliivikyiiiiiiiiiiinnq*liiixhnrn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHP894 (CHP894Q) /CSM/CH/CHP8-D/CHP894Q.Seq.d/ 666 0.0 VSE132 (VSE132Q) /CSM/VS/VSE1-B/VSE132Q.Seq.d/ 648 0.0 SSC372 (SSC372Q) /CSM/SS/SSC3-C/SSC372Q.Seq.d/ 648 0.0 FC-BM09 (FC-BM09Q) /CSM/FC/FC-BM/FC-BM09Q.Seq.d/ 648 0.0 VSA776 (VSA776Q) /CSM/VS/VSA7-D/VSA776Q.Seq.d/ 640 0.0 VFJ882 (VFJ882Q) /CSM/VF/VFJ8-D/VFJ882Q.Seq.d/ 624 e-178 SHJ704 (SHJ704Q) /CSM/SH/SHJ7-A/SHJ704Q.Seq.d/ 44 0.004 CHP312 (CHP312Q) /CSM/CH/CHP3-A/CHP312Q.Seq.d/ 44 0.004 SHB874 (SHB874Q) /CSM/SH/SHB8-D/SHB874Q.Seq.d/ 42 0.017
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N BA000026\|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 2e-05 25 BX842643\|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 2e-04 19 AE017245\|AE017245.1 Mycoplasma synoviae 53, complete genome. 34 0.001 21 AP006628\|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 34 0.002 18 AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 36 0.002 21 CP000084\|CP000084.1 Candidatus Pelagibacter ubique HTCC1062, complete genome. 34 0.005 26 AW854988\|AW854988.1 PM0-CT0263-021299-006-f08 CT0263 Homo sapiens cDNA, mRNA sequence. 38 0.011 2 AE009951\|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome. 36 0.012 25 AE017308\|AE017308.1 Mycoplasma mobile 163K complete genome. 36 0.013 20 BA000016\|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 34 0.060 28
dna update	2005.10.29
Homology vs Protein	*** No hits found **** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3039690 Number of Hits to DB: 1,052,209,563
protein update	2009. 4.11
PSORT	psg: 0.67 gvh: 0.37 alm: 0.62 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: endoplasmic reticulum >> prediction for CHP894 is nuc
5' end seq. ID	CHP894F
5' end seq.	>CHP894F.Seq CTGTTGGCCTACTGGNATTTTATAAAAACCCTGNCACTTTAAAAAAAAAGCCACCTTATT TTCTTTAAATAATAATTAATAATCTTAATAGTATAATAAAATGACATTTGTTAAAGGNGT TTGTTTCGATCCAGCTCAAGCAAAAAAATCAGTTTTAGATGTTAAAGAAACTCTTTTAAA TTTAGAAACCCAAGTAAAGAAAACTTCATTATCAAAAGATGAAGCTGTAGATGCTTATAA AATTTATGAAACTTTACCACTCACTTTCCAAATCAATTGGTCTATTGCAGGTGAAGATGC TAATGAAAACCAAAAAGTTGCAGATTTCTGTAGAGACAAATTAAATGAATTAAATCATGT CCATAATTTTACATCATCTAAAATTCCAAGAGCTTTCAATGCTGATAATAGTTATTAAAT ATATATGAATAATAATAATAATAATAATAATAATAATCAATAATCAATAATAATTAATAA TAATAATTCTTTAAAATAGAAATTGTTGTCTACTTGTAAATATATAAATAAAATAAACCA AATCTTTAAACACTTAANAAAAAAANNNNNNNNNN
Length of 5' end seq.	575
3' end seq. ID	CHP894Z
3' end seq.	>CHP894Z.Seq NNNNNNNNNNAAANNCAAAGGCCNCCTTATNTTCTNTNAATNNNAATTAATGATCTTAAT AGTATNATAAAATGACATTTGTTAAAGGTGTTTGTTTCGATCCAGCTCAAGCAAAGAAAT CAGTTTTAGATGTTAAAGAAACTCTTTTAAATTTAGAAACCCAAGTAAAGAAAACTTCAT TATCAAAAGATGAAGCTGTAGATGCTTATAAAATTTATGAAACTTTACCACTCACTTTCC AAATCAATTGGTCTATTGCAGGTGAAGATGCTAATGAAAACCAAAAAGTTGCAGATTTCT GTAGAGACAAATTAAATGAATTAAATCATGTCCATAATTTTACATCATCTAAAATTCCAA GAGCTTTCAATGCTGATAATAGTTATTAAATATATATGAATAATAATAATAATAATAATA ATAATAATCAATAATCAATAATAATTAATAATAATANTACATTAAAATAGAAATT
Length of 3' end seq.	475
Connected seq. ID	CHP894P
Connected seq.	>CHP894P.Seq CTGTTGGCCTACTGGNATTTTATAAAAACCCTGNCACTTTAAAAAAAAAGCCACCTTATT TTCTTTAAATAATAATTAATAATCTTAATAGTATAATAAAATGACATTTGTTAAAGGNGT TTGTTTCGATCCAGCTCAAGCAAAAAAATCAGTTTTAGATGTTAAAGAAACTCTTTTAAA TTTAGAAACCCAAGTAAAGAAAACTTCATTATCAAAAGATGAAGCTGTAGATGCTTATAA AATTTATGAAACTTTACCACTCACTTTCCAAATCAATTGGTCTATTGCAGGTGAAGATGC TAATGAAAACCAAAAAGTTGCAGATTTCTGTAGAGACAAATTAAATGAATTAAATCATGT CCATAATTTTACATCATCTAAAATTCCAAGAGCTTTCAATGCTGATAATAGTTATTAAAT ATATATGAATAATAATAATAATAATAATAATAATAATCAATAATCAATAATAATTAATAA TAATAATTCTTTAAAATAGAAATTGTTGTCTACTTGTAAATATATAAATAAAATAAACCA AATCTTTAAACACTTAANAAAAAAA----------AAANNCAAAGGCCNCCTTATNTTCT NTNAATNNNAATTAATGATCTTAATAGTATNATAAAATGACATTTGTTAAAGGTGTTTGT TTCGATCCAGCTCAAGCAAAGAAATCAGTTTTAGATGTTAAAGAAACTCTTTTAAATTTA GAAACCCAAGTAAAGAAAACTTCATTATCAAAAGATGAAGCTGTAGATGCTTATAAAATT TATGAAACTTTACCACTCACTTTCCAAATCAATTGGTCTATTGCAGGTGAAGATGCTAAT GAAAACCAAAAAGTTGCAGATTTCTGTAGAGACAAATTAAATGAATTAAATCATGTCCAT AATTTTACATCATCTAAAATTCCAAGAGCTTTCAATGCTGATAATAGTTATTAAATATAT ATGAATAATAATAATAATAATAATAATAATAATCAATAATCAATAATAATTAATAATAAT ANTACATTAAAATAGAAATT
Length of connected seq.	1030
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas