CHP873 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHP873
Library	CH (Link to library)
Clone ID	CHP873 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10720-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHP8-D/CHP873Q.Seq.d/
Representative seq. ID	CHP873P (Link to Original site)
Representative DNA sequence	>CHP873 (CHP873Q) /CSM/CH/CHP8-D/CHP873Q.Seq.d/ CTGTTGGCCTACGGNAAAAACAAAAAAACAAAAAACATAATTTTTTTTTAATACCATTAA AATAATTTTTCTCGTACAAAAATAATGAGCGATAACAATTTAGAAACACCAACTAATGTT TCAGAGGAAACTAAAGTCGAAGAAGTTAAAGTAGAAAATACTTTACCAATTGAAGACGAA AAACTTGAACAACCATCAGAAGAAATTAAAGTTGAAGCCACATCAGTCTCTGTTGAAGAA ACCAAACCAACTGAAGAGGTAAAACCAGTCGAAGAAGTAAAACCAATCGAAGAAGTAAAA CCAGTTGAAGAAGTTAAACCAGTTGAAGAAGTCAAACCAGTCGAAGAAGTCAAACCAGTT GAAGAAGTCAAACCAACTGAAGAAGTAAAACCAGTCGAAGAAGTCAAACAAGACGAAGAA GTCAAACCAACTGAGGAAGTTAAACAAGTCGAAGAAGTCAAACAAGTCGAAGAAGTTAAG CAAGTCGAAGAAGTCAAACCAACTGAAGAAGTCAAACCAGTTGAAGAAGTTAAACCAGTT GAAGAAGTCAAACCAGNCGAAGAAGTCAAACCAGTTGAAGAAGCAAAACCAGTCGAAGAA GTTAAACCAACTGAAGAAGTAAAGCCAGTCGAAGAAGTAAAACCAGTCGAAGAAGTAAAA CCAGTCGAGGAAGTAAACAAGCTGAAGAAGTCAAACCAGTCGAAGAGGTCAAACCAGTTG AAGAAGTCAAACCAGTTGGAGAAGCCAAACCACTGGAGNAGTCAAXXXXXXXXXXTACCA TTCATAAAGTAATGAAATTNTGAATCATCAGCAAAGTTTGGTTTAGGTGCTATGCTTGAT GCTGCTAAACTTCCACAAAATAAAGATATGAGTGATAATTTGAATAAAACTATTCCATGG TTCGTTAGAAAAGTAGTTTTCCCACTTAGTATTAAAAAAGATTTTGCTCAATTCCTTAAT TTCATTGAAGCTAAACCAGTTAAAGAATCAAAACCAGTTAAAGAATCAAAATCTAAAACA ACAACAACTACAACTACCACCACTACTACTGAAGAAGTTAAACCATCAGAAGAAGTTAAA CCATCAGAAGAAGTTAAACCATCAGAAGAAGTCAAACCATCAGAAGAAGTCAAACCATCA GAAGAAGTTAAACCATCAGAAGAAGCTAAACCATCAGAGGAAGTTAAACCATCAGAAGAG GAAGCCAAACCATCAAAAGAGGAAGCCGAATCATCAAAAGAGGAAGGCAAATCATCAGAA GAAGTTAAACCAGTTGAATCAAACACCACCACCACTACCACAACAACTTCATCAGAAGAA GTTAAATCAACTGAAGAAATCAAACCAACCACTCAATCAGAAGAAGTTAAGCCATCTGAA ACTACTGTTGTTGTTGGTGAAGTTGCTTAAAAATTCAATNCCAATAATCATTAAATATAT ACTACCACATACTTTTAAT
sequence update	2002.10.25
Translated Amino Acid sequence	llaygknkktkniiffyhNNFSRTKIMSDNNLETPTNVSEETKVEEVKVENTLPIEDE KLEQPSEEIKVEATSVSVEETKPTEEVKPVEEVKPIEEVKPVEEVKPVEEVKPVEEVKPV EEVKPTEEVKPVEEVKQDEEVKPTEEVKQVEEVKQVEEVKQVEEVKPTEEVKPVEEVKPV EEVKPXEEVKPVEEAKPVEEVKPTEEVKPVEEVKPVEEVKPVEEVNKLKKSNQSKRSNQL KKSNQLEKPNHWXSQ--- ---TIHKVMKXiiskvwfrcyacctstkrye*fenysmvrkssfptykrfc sipfhstsriktsrikinnnnynyhhyyrstirrstirrstirrsqtirr sqtirrstirrstirgstirrgsqtikrgsriikrgrqiirrstsikhhhhyhnn firrsinrnqtnhsirrsainycccwsclkiqxqslniyyhill
Translated Amino Acid sequence (All Frames)	Frame A: llaygknkktkniiffyhNNFSRTKIMSDNNLETPTNVSEETKVEEVKVENTLPIEDE KLEQPSEEIKVEATSVSVEETKPTEEVKPVEEVKPIEEVKPVEEVKPVEEVKPVEEVKPV EEVKPTEEVKPVEEVKQDEEVKPTEEVKQVEEVKQVEEVKQVEEVKPTEEVKPVEEVKPV EEVKPXEEVKPVEEAKPVEEVKPTEEVKPVEEVKPVEEVKPVEEVNKLKKSNQSKRSNQL KKSNQLEKPNHWXSQ--- ---yhssneixnhqqslvvlclmllnfhkikiviiiklfhgslekfshlvlkkil lnslislklnqlknqnqlknqnlkqqqlqlpplllkklnhqkklnhqkklnhqkksnhqk ksnhqkklnhqkklnhqrklnhqkrkpnhqkrkpnhqkrkanhqkklnqlnqtppplpqq lhqkklnqlkksnqplnqkklshlklllllvkllknsxpiiikyilphtfn Frame B: cwptxktkkqktfffntikiiflvqk*aitikhqlmfqrklkskklkkilyqlktk nlnnhqkklklkphqsllkkpnqlkrnqskknqskknqlkklnqlkksnqskksnql kksnqlkknqskksnktkksnqlrklnkskksnkskklskskksnqlkksnqlkklnql kksnqxkksnqlkkqnqskklnqlkksqskknqskknqsrktsrsqtsrrgqts* rsqtswrsqttgxv--- ---TIHKVMKXiiskvwfrcyacctstkrye*fenysmvrkssfptykrfc sipfhstsriktsrikinnnnynyhhyyrstirrstirrstirrsqtirr sqtirrstirrstirgstirrgsqtikrgsriikrgrqiirrstsikhhhhyhnn firrsinrnqtnhsirrsainycccwsclkiqxqslniyyhill Frame C: vglrxkqknkkhnffliplkffsyknnerqfrntncfrgnsrrssrkyftnrrk tttirrnsshislcrnqtnrgktsrrsktnrrsktsrstsrsqtsrrsqts* rsqtnrsktsrrsqtrrrsqtngstsrrsqtsrrsasrrsqtnrsqtsrsts rsqtxrrsqtsrsktsrrstnrskasrrsktsrrsktsrgskqaeevkpveevkpve evkpvgeakplexs--- ---pfiknxessakfglgamldaaklpqnkdmsdnlnktipwfvrkvvfplsikkdfa qflnfieakpvkeskpvkeskskttttttttttteevkpseevkpseevkpseevkpsee vkpseevkpseeakpseevkpseeeakpskeeaesskeegksseevkpvesntttttttt sseevksteeikpttqseevkpsettvvvgevakfnxnnhiytttyf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHP873 (CHP873Q) /CSM/CH/CHP8-D/CHP873Q.Seq.d/ 1828 0.0 CHR146 (CHR146Q) /CSM/CH/CHR1-B/CHR146Q.Seq.d/ 1304 0.0 AHD318 (AHD318Q) /CSM/AH/AHD3-A/AHD318Q.Seq.d/ 1304 0.0 AHC727 (AHC727Q) /CSM/AH/AHC7-B/AHC727Q.Seq.d/ 1304 0.0 SFE244 (SFE244Q) /CSM/SF/SFE2-B/SFE244Q.Seq.d/ 1296 0.0 CHF523 (CHF523Q) /CSM/CH/CHF5-A/CHF523Q.Seq.d/ 1296 0.0 AHI482 (AHI482Q) /CSM/AH/AHI4-D/AHI482Q.Seq.d/ 1275 0.0 SFI171 (SFI171Q) /CSM/SF/SFI1-C/SFI171Q.Seq.d/ 1251 0.0 SFF306 (SFF306Q) /CSM/SF/SFF3-A/SFF306Q.Seq.d/ 1108 0.0 AHG644 (AHG644Q) /CSM/AH/AHG6-B/AHG644Q.Seq.d/ 1092 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N Z37981\|Z37981.1 D.discoideum gene for protein kinase. 40 5e-27 11 CV219883\|CV219883.1 EST879593 non-normalized T1 cDNA library Trichomonas vaginalis cDNA clone TVTD023 5' end, mRNA sequence. 52 3e-13 3 BW559326\|BW559326.1 Ciona savignyi cDNA, clone:cslv010m05, 3'end, single read. 44 1e-12 6 CX155596\|CX155596.1 TfEST049E01 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 30 1e-11 7 BW529286\|BW529286.1 Ciona savignyi cDNA, clone:cslv010m05, 5'end, single read. 44 2e-11 6 AC166562\|AC166562.1 Spironucleus vortens clone JGIBAWF-9F12, WORKING DRAFT SEQUENCE, 12 unordered pieces. 34 5e-11 12 AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 34 8e-10 28 AZ163905\|AZ163905.1 SP_0074_B2_B08_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=74 Col=16 Row=D, DNA sequence. 44 8e-10 6 AZ672575\|AZ672575.1 ENTLT12TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 34 2e-08 5 CZ542968\|CZ542968.1 SRAA-aad47b11.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence. 44 2e-07 4
dna update	2005.10.27
Homology vs Protein	*** No hits found **** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3039690 Number of Hits to DB: 620,693,778
protein update	2009. 4.11
PSORT	psg: 0.57 gvh: 0.23 alm: 0.63 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.02 nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: nuclear 28.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for CHP873 is nuc
5' end seq. ID	CHP873F
5' end seq.	>CHP873F.Seq CTGTTGGCCTACGGNAAAAACAAAAAAACAAAAAACATAATTTTTTTTTAATACCATTAA AATAATTTTTCTCGTACAAAAATAATGAGCGATAACAATTTAGAAACACCAACTAATGTT TCAGAGGAAACTAAAGTCGAAGAAGTTAAAGTAGAAAATACTTTACCAATTGAAGACGAA AAACTTGAACAACCATCAGAAGAAATTAAAGTTGAAGCCACATCAGTCTCTGTTGAAGAA ACCAAACCAACTGAAGAGGTAAAACCAGTCGAAGAAGTAAAACCAATCGAAGAAGTAAAA CCAGTTGAAGAAGTTAAACCAGTTGAAGAAGTCAAACCAGTCGAAGAAGTCAAACCAGTT GAAGAAGTCAAACCAACTGAAGAAGTAAAACCAGTCGAAGAAGTCAAACAAGACGAAGAA GTCAAACCAACTGAGGAAGTTAAACAAGTCGAAGAAGTCAAACAAGTCGAAGAAGTTAAG CAAGTCGAAGAAGTCAAACCAACTGAAGAAGTCAAACCAGTTGAAGAAGTTAAACCAGTT GAAGAAGTCAAACCAGNCGAAGAAGTCAAACCAGTTGAAGAAGCAAAACCAGTCGAAGAA GTTAAACCAACTGAAGAAGTAAAGCCAGTCGAAGAAGTAAAACCAGTCGAAGAAGTAAAA CCAGTCGAGGAAGTAAACAAGCTGAAGAAGTCAAACCAGTCGAAGAGGTCAAACCAGTTG AAGAAGTCAAACCAGTTGGAGAAGCCAAACCACTGGAGNAGTCAANNNNNNNNNN
Length of 5' end seq.	775
3' end seq. ID	CHP873Z
3' end seq.	>CHP873Z.Seq NNNNNNNNNNTACCATTCATAAAGTAATGAAATTNTGAATCATCAGCAAAGTTTGGTTTA GGTGCTATGCTTGATGCTGCTAAACTTCCACAAAATAAAGATATGAGTGATAATTTGAAT AAAACTATTCCATGGTTCGTTAGAAAAGTAGTTTTCCCACTTAGTATTAAAAAAGATTTT GCTCAATTCCTTAATTTCATTGAAGCTAAACCAGTTAAAGAATCAAAACCAGTTAAAGAA TCAAAATCTAAAACAACAACAACTACAACTACCACCACTACTACTGAAGAAGTTAAACCA TCAGAAGAAGTTAAACCATCAGAAGAAGTTAAACCATCAGAAGAAGTCAAACCATCAGAA GAAGTCAAACCATCAGAAGAAGTTAAACCATCAGAAGAAGCTAAACCATCAGAGGAAGTT AAACCATCAGAAGAGGAAGCCAAACCATCAAAAGAGGAAGCCGAATCATCAAAAGAGGAA GGCAAATCATCAGAAGAAGTTAAACCAGTTGAATCAAACACCACCACCACTACCACAACA ACTTCATCAGAAGAAGTTAAATCAACTGAAGAAATCAAACCAACCACTCAATCAGAAGAA GTTAAGCCATCTGAAACTACTGTTGTTGTTGGTGAAGTTGCTTAAAAATTCAATNCCAAT AATCATTAAATATATACTACCACATACTTTTAAT
Length of 3' end seq.	694
Connected seq. ID	CHP873P
Connected seq.	>CHP873P.Seq CTGTTGGCCTACGGNAAAAACAAAAAAACAAAAAACATAATTTTTTTTTAATACCATTAA AATAATTTTTCTCGTACAAAAATAATGAGCGATAACAATTTAGAAACACCAACTAATGTT TCAGAGGAAACTAAAGTCGAAGAAGTTAAAGTAGAAAATACTTTACCAATTGAAGACGAA AAACTTGAACAACCATCAGAAGAAATTAAAGTTGAAGCCACATCAGTCTCTGTTGAAGAA ACCAAACCAACTGAAGAGGTAAAACCAGTCGAAGAAGTAAAACCAATCGAAGAAGTAAAA CCAGTTGAAGAAGTTAAACCAGTTGAAGAAGTCAAACCAGTCGAAGAAGTCAAACCAGTT GAAGAAGTCAAACCAACTGAAGAAGTAAAACCAGTCGAAGAAGTCAAACAAGACGAAGAA GTCAAACCAACTGAGGAAGTTAAACAAGTCGAAGAAGTCAAACAAGTCGAAGAAGTTAAG CAAGTCGAAGAAGTCAAACCAACTGAAGAAGTCAAACCAGTTGAAGAAGTTAAACCAGTT GAAGAAGTCAAACCAGNCGAAGAAGTCAAACCAGTTGAAGAAGCAAAACCAGTCGAAGAA GTTAAACCAACTGAAGAAGTAAAGCCAGTCGAAGAAGTAAAACCAGTCGAAGAAGTAAAA CCAGTCGAGGAAGTAAACAAGCTGAAGAAGTCAAACCAGTCGAAGAGGTCAAACCAGTTG AAGAAGTCAAACCAGTTGGAGAAGCCAAACCACTGGAGNAGTCAA----------TACCA TTCATAAAGTAATGAAATTNTGAATCATCAGCAAAGTTTGGTTTAGGTGCTATGCTTGAT GCTGCTAAACTTCCACAAAATAAAGATATGAGTGATAATTTGAATAAAACTATTCCATGG TTCGTTAGAAAAGTAGTTTTCCCACTTAGTATTAAAAAAGATTTTGCTCAATTCCTTAAT TTCATTGAAGCTAAACCAGTTAAAGAATCAAAACCAGTTAAAGAATCAAAATCTAAAACA ACAACAACTACAACTACCACCACTACTACTGAAGAAGTTAAACCATCAGAAGAAGTTAAA CCATCAGAAGAAGTTAAACCATCAGAAGAAGTCAAACCATCAGAAGAAGTCAAACCATCA GAAGAAGTTAAACCATCAGAAGAAGCTAAACCATCAGAGGAAGTTAAACCATCAGAAGAG GAAGCCAAACCATCAAAAGAGGAAGCCGAATCATCAAAAGAGGAAGGCAAATCATCAGAA GAAGTTAAACCAGTTGAATCAAACACCACCACCACTACCACAACAACTTCATCAGAAGAA GTTAAATCAACTGAAGAAATCAAACCAACCACTCAATCAGAAGAAGTTAAGCCATCTGAA ACTACTGTTGTTGTTGGTGAAGTTGCTTAAAAATTCAATNCCAATAATCATTAAATATAT ACTACCACATACTTTTAAT
Length of connected seq.	1449
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas