>CHP859 (CHP859Q) /CSM/CH/CHP8-C/CHP859Q.Seq.d/
XXXXXXXXXXTTCCAAGTAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTANA
AAGAAGAAATGTTAGTATTAAATATNAAAATGAAATTAAAGAACTTTATGGTG

---QVTGETSELTPTKKLXRRNVSIKYXNEIKELYG

Frame A:
---sk*lvklln*lqlknxkeemlvlnxkmklknfmv


Frame B:
---psnw*nf*insn*kixkkkc*y*ixk*n*rtlw


Frame C:
---QVTGETSELTPTKKLXRRNVSIKYXNEIKELYG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP859 (CHP859Q) /CSM/CH/CHP8-C/CHP859Q.Seq.d/                        192   7e-49
VHE260 (VHE260Q) /CSM/VH/VHE2-C/VHE260Q.Seq.d/                        184   2e-46
VFJ765 (VFJ765Q) /CSM/VF/VFJ7-C/VFJ765Q.Seq.d/                        184   2e-46
VFD380 (VFD380Q) /CSM/VF/VFD3-D/VFD380Q.Seq.d/                        184   2e-46
CHR348 (CHR348Q) /CSM/CH/CHR3-B/CHR348Q.Seq.d/                        184   2e-46
CHQ796 (CHQ796Q) /CSM/CH/CHQ7-D/CHQ796Q.Seq.d/                        184   2e-46
CHO621 (CHO621Q) /CSM/CH/CHO6-A/CHO621Q.Seq.d/                        184   2e-46
CHN456 (CHN456Q) /CSM/CH/CHN4-C/CHN456Q.Seq.d/                        184   2e-46
CHL553 (CHL553Q) /CSM/CH/CHL5-C/CHL553Q.Seq.d/                        184   2e-46
CHG165 (CHG165Q) /CSM/CH/CHG1-C/CHG165Q.Seq.d/                        184   2e-46

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    32   0.066  6
AX282714|AX282714.1 Sequence 1 from Patent WO0164876.              46   0.13   1
AX282122|AX282122.1 Sequence 1 from Patent WO0164877.              46   0.13   1
AC104029|AC104029.5 Homo sapiens chromosome 8, clone RP11-478B14, complete sequence.    46   0.13   1
DD062477|DD062477.1 HUMAN SCHIZOPHRENIA GENE.                      46   0.13   1
DD021122|DD021122.1 HUMAN SCHIZOPHRENIA GENE.                      46   0.13   1
AF491780|AF491780.1 Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced.    46   0.13   1
AC104000|AC104000.5 Homo sapiens chromosome 8, clone RP11-97N12, complete sequence.    46   0.13   1
BZ886363|BZ886363.1 CH240_219O21.TV CHORI-240 Bos taurus genomic clone CH240_219O21, DNA sequence.    34   0.36   3
AF260012|AF260012.3 Homo sapiens chromosome 8 clone RP3-491L6 map 8q2, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40   0.80   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000509_3567(CP000509|pid:none) Nocardioides sp. JS614, complet...    36   0.36
AM286415_622(AM286415|pid:none) Yersinia enterocolitica subsp. e...    35   1.0
BA000031_351(BA000031|pid:none) Vibrio parahaemolyticus RIMD 221...    34   1.4
FM954972_339(FM954972|pid:none) Vibrio splendidus LGP32 chromoso...    34   1.4
BA000037_494(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, chr...    34   1.4
AM746676_8711(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    34   1.8
CP000644_664(CP000644|pid:none) Aeromonas salmonicida subsp. sal...    33   2.3
CP000720_3355(CP000720|pid:none) Yersinia pseudotuberculosis IP ...    33   2.3
AE009952_3593(AE009952|pid:none) Yersinia pestis KIM, complete g...    33   2.3
CP000431_2673(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    32   5.2

 psg: 0.75  gvh: 0.08  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for CHP859 is nuc

>CHP859Z.Seq
NNNNNNNNNNTTCCAAGTAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTANA
AAGAAGAAATGTTAGTATTAAATATNAAAATGAAATTAAAGAACTTTATGGTG