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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP858
Library CH
(Link to library)
Clone ID CHP858
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15639-1
Original site URL
Representative seq. ID CHP858P
(Link to Original site)
Representative DNA sequence 
>CHP858 (CHP858Q) /CSM/CH/CHP8-C/CHP858Q.Seq.d/
CTGTTGGCCTACTGGNATTTTTTTTTTTATAAAAACTAATTATAATAAATAATTTTTTAT
TACATTATTTTATTTTTTTTTATTTTTTTATTTTTTTTAAAAATTTTAAATAAAAATNTT
ANCAAATNTTATTTAATTTATTTATTTTTTATATATATATAAAATATANATTTATTTTTT
TTTAAAAANAAAAAGAANAAAAAGAAAAAAAATNGTXXXXXXXXXXTCATTACGTTTCAT
TCGTGAAGAGATTNTCAGAGAGATGAAAGTTAGTAGTAGACAAACTGCATTCAATAAAAT
CATTAAAGATACATTGATTCAACATGTTCGTGTTGTTTTCAATGGTGATGGTTATAGTGG
TGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCATCGACTCCAGAGGC
TTTAACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTCTGAAAGTAATATTCTCTC
ACCAGTTGAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAATCAATTAA
AATCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGTACTTCCAGCTTGTTTTGC
TCATCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAAGTCAAAA
ATCTTTCAGTCAACCAAATCATCAATATTCTCATCTCTNCTGAAGTCGTTGAATCTGTCA
ATCTCTTAATTGAAGCTAATCAAAAACTTTTGGCTCTCATTAAACAAACTAAAGATTTCA
ATTCTGAACATTCACTCGCAACTTTCCTCAATCAATNCTGTAATTCCACAAATGAATGAA
GTTCGTAAATTTNCTGATCATTAGAAGGTATTGTTGAAGATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgifffiktnynk*ffitlfyfflffyff*kf*ikxlxnxi*FIYFLYIYKIXIYFF
LKXKRXKRKKX---

---SLRFIREEIXREMKVSSRQTAFNKIIKDTLIQHVRVVFNGDGYSGDWKELAKSRGLA
NLPSTPEALTNINSEKNIKLFSESNILSPVELESRQEILFEIYNKSIKIEANSLYDLVST
LVLPACFAHQKNIAESVNSIMPFIQSQKSFSQPNHQYSHLX*sr*icqsln*s*sktfgs
h*tn*rfqf*tftrnfpqsxl*fhk*mkfvnxliirryc*r*
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxfffykn*l**iifyyiilfffiflfflkilnknxxkxyliylffiyi*nixlff
fkxkkxkkkknx---

---SLRFIREEIXREMKVSSRQTAFNKIIKDTLIQHVRVVFNGDGYSGDWKELAKSRGLA
NLPSTPEALTNINSEKNIKLFSESNILSPVELESRQEILFEIYNKSIKIEANSLYDLVST
LVLPACFAHQKNIAESVNSIMPFIQSQKSFSQPNHQYSHLX*sr*icqsln*s*sktfgs
h*tn*rfqf*tftrnfpqsxl*fhk*mkfvnxliirryc*r*

Frame B:
cwptgifffiktnynk*ffitlfyfflffyff*kf*ikxlxnxi*FIYFLYIYKIXIYFF
LKXKRXKRKKX---

---hyvsfvkrxser*klvvdklhsikslkih*fnmfvlfsmvmvivvigknspnlev*q
iyhrlqrl*qiltlkrilnsflkvifshqlnwnhvkrfslkfiinqlkskqtlymi*fql
wyfqlvllikrillnl*tl*chsfkvknlsvnqiinilisxevvesvnllieanqkllal
ikqtkdfnsehslatflnqxcnstne*ss*ix*slegived

Frame C:
vgllxfffl*kliiinnfllhyfiffyffiffknfk*kxxqxlfnlfifyiyikyxfiff
*kxkexkekkx---

---itfhs*rdxqrdes***tnciq*nh*ryidstcsccfqw*wl*w*lertrqi*rfsk
ftidsrgfnky*l*key*tlf*k*yslts*igitsrdsl*nl**in*nrsklfi*fsfnf
gtsslfcsskeyc*icklynaihskskifqstkssifssllkslnlsis*lkliknfwls
lnklkisilnihsqlssinxvipqmnevrkfxdh*kvllki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP858 (CHP858Q) /CSM/CH/CHP8-C/CHP858Q.Seq.d/                       1279   0.0
CHQ559 (CHQ559Q) /CSM/CH/CHQ5-C/CHQ559Q.Seq.d/                       1245   0.0
CHM692 (CHM692Q) /CSM/CH/CHM6-D/CHM692Q.Seq.d/                       1245   0.0
CHI606 (CHI606Q) /CSM/CH/CHI6-A/CHI606Q.Seq.d/                       1245   0.0
CHI220 (CHI220Q) /CSM/CH/CHI2-A/CHI220Q.Seq.d/                       1245   0.0
CHG760 (CHG760Q) /CSM/CH/CHG7-C/CHG760Q.Seq.d/                       1245   0.0
AHM550 (AHM550Q) /CSM/AH/AHM5-C/AHM550Q.Seq.d/                       1245   0.0
AHL246 (AHL246Q) /CSM/AH/AHL2-B/AHL246Q.Seq.d/                       1245   0.0
AHE346 (AHE346Q) /CSM/AH/AHE3-B/AHE346Q.Seq.d/                       1245   0.0
AHL106 (AHL106Q) /CSM/AH/AHL1-A/AHL106Q.Seq.d/                       1237   0.0
own update 2002.10. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX248584|BX248584.1 Blochmannia floridanus complete genome; segment 1/3.    32   0.021  10
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.026  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.046  13
AC107128|AC107128.5 Rattus norvegicus clone CH230-133F6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    40   0.10   5
AC007178|AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.    44   0.10   5
AC094696|AC094696.4 Rattus norvegicus clone CH230-5F3, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    40   0.11   3
AC099803|AC099803.1 Homo sapiens chromosome 18 clone RP11-152J5 map 18, LOW-PASS SEQUENCE SAMPLING.    40   0.16   3
AC094665|AC094665.6 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    40   0.17   3
CR940352|CR940352.2 Theileria annulata genomic DNA chromosome 3.    38   0.42   18
CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    36   0.47   22
dna update 2005.10.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase;          EC=...   306   2e-98
CP000885_3336(CP000885|pid:none) Clostridium phytofermentans ISD...   100   6e-20
CP000359_1193(CP000359|pid:none) Deinococcus geothermalis DSM 11...    97   9e-19
CP001348_555(CP001348|pid:none) Clostridium cellulolyticum H10, ...    97   9e-19
CP001124_3048(CP001124|pid:none) Geobacter bemidjiensis Bem, com...    95   3e-18
CP000568_195(CP000568|pid:none) Clostridium thermocellum ATCC 27...    94   4e-18
AE017285_1252(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...    94   6e-18
CP000859_2266(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...    93   1e-17
CT573071_568(CT573071|pid:none) Kuenenia stuttgartiensis genome ...    93   1e-17
CP000510_3297(CP000510|pid:none) Psychromonas ingrahamii 37, com...    92   2e-17
protein update 2009. 4.11
PSORT 

 psg: 0.83  gvh: 0.18  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.06
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: plasma membrane

>> prediction for CHP858 is nuc
5' end seq. ID CHP858F
5' end seq. 
>CHP858F.Seq
CTGTTGGCCTACTGGNATTTTTTTTTTTATAAAAACTAATTATAATAAATAATTTTTTAT
TACATTATTTTATTTTTTTTTATTTTTTTATTTTTTTTAAAAATTTTAAATAAAAATNTT
ANCAAATNTTATTTAATTTATTTATTTTTTATATATATATAAAATATANATTTATTTTTT
TTTAAAAANAAAAAGAANAAAAAGAAAAAAAATNGTNNNNNNNNNN
Length of 5' end seq. 226
3' end seq. ID CHP858Z
3' end seq. 
>CHP858Z.Seq
NNNNNNNNNNTCATTACGTTTCATTCGTGAAGAGATTNTCAGAGAGATGAAAGTTAGTAG
TAGACAAACTGCATTCAATAAAATCATTAAAGATACATTGATTCAACATGTTCGTGTTGT
TTTCAATGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAGC
AAATTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAACT
CTTTTCTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCTT
TGAAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAAC
TTTGGTACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTAT
AATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATCT
CTNCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTTTGGCTC
TCATTAAACAAACTAAAGATTTCAATTCTGAACATTCACTCGCAACTTTCCTCAATCAAT
NCTGTAATTCCACAAATGAATGAAGTTCGTAAATTTNCTGATCATTAGAAGGTATTGTTG
AAGATAA
Length of 3' end seq. 667
Connected seq. ID CHP858P
Connected seq. 
>CHP858P.Seq
CTGTTGGCCTACTGGNATTTTTTTTTTTATAAAAACTAATTATAATAAATAATTTTTTAT
TACATTATTTTATTTTTTTTTATTTTTTTATTTTTTTTAAAAATTTTAAATAAAAATNTT
ANCAAATNTTATTTAATTTATTTATTTTTTATATATATATAAAATATANATTTATTTTTT
TTTAAAAANAAAAAGAANAAAAAGAAAAAAAATNGT----------TCATTACGTTTCAT
TCGTGAAGAGATTNTCAGAGAGATGAAAGTTAGTAGTAGACAAACTGCATTCAATAAAAT
CATTAAAGATACATTGATTCAACATGTTCGTGTTGTTTTCAATGGTGATGGTTATAGTGG
TGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCATCGACTCCAGAGGC
TTTAACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTCTGAAAGTAATATTCTCTC
ACCAGTTGAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAATCAATTAA
AATCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGTACTTCCAGCTTGTTTTGC
TCATCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAAGTCAAAA
ATCTTTCAGTCAACCAAATCATCAATATTCTCATCTCTNCTGAAGTCGTTGAATCTGTCA
ATCTCTTAATTGAAGCTAATCAAAAACTTTTGGCTCTCATTAAACAAACTAAAGATTTCA
ATTCTGAACATTCACTCGCAACTTTCCTCAATCAATNCTGTAATTCCACAAATGAATGAA
GTTCGTAAATTTNCTGATCATTAGAAGGTATTGTTGAAGATAA
Length of connected seq. 873
Full length Seq ID -
Full length Seq. -
Length of full length seq. -