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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP847
Library CH
(Link to library)
Clone ID CHP847
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16586-1
Original site URL
Representative seq. ID CHP847P
(Link to Original site)
Representative DNA sequence 
>CHP847 (CHP847Q) /CSM/CH/CHP8-B/CHP847Q.Seq.d/
ACTGTTGGCCTACTGGNAATCTCTACCATACCTTTCAATNCGTTTATTCATCCCTTATCA
AAAACACACACACACACATATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAA
AAAAAAAAAAATANCAATAATAATAATANTTTTTTAAAAATAAAAAANTAAAAAAATAAA
ACCAANTTAAAAAATAATTTAATAATAATAATTTTTCNTTTTTAANGAAGACAACCAANT
AAAAAAAATAAAATANTAANTAAANTTTAAAAAAAAAAXXXXXXXXXXTCGGTCATATCG
ATAAGGATGGTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTG
GTGAAAATATTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAAC
AAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTG
ATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAG
AAGCTTCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATT
CAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAG
AAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxslpylsxrlfipyqkhththiyikliyyflfvikkkkixiiiixf*k*kxkkik
px*kii****ffxfxednqxkkikx*XXFKKK---

---GHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQKYLVA
LVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKKVKI
LPVEFQETGETSELTPTKKL
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxistipfnxfihplskththtyiykinlllfichkkkknxnnnnxflkikx*knk
txlknnliiiifxf*xrqpxkknkixxkx*kk---

---svisirmvsfsspierks*slqqvvkifhqp*lkvsfvkslvlnkp**lvivkni*l
lwslsmliyssyyqvkvtlihyqnqwkklqqinislpililk*kiliqnfqmfqqlkklk
fyqlnskklvklln*lqlkny

Frame B:
llaywxslpylsxrlfipyqkhththiyikliyyflfvikkkkixiiiixf*k*kxkkik
px*kii****ffxfxednqxkkikx*XXFKKK---

---rsyr*gwfhfhhr*kervnhysrw*kyftnld*rfhssnhwc*tsrsnw*sskifsc
fghcqc*fiqvitrsrlhssitkingrsfnr*tfhcly*fsnery*fktskcfnn*ks*n
fts*iprnw*nf*insn*ki

Frame C:
cwptgnlyhtfqxvyssliknththiyi*n*fitfyls*kkkkxq***xffknkkxkk*n
qxkk*fnnnnfsflxkttx*kk*nxx*xlkkk---

---GHIDKDGFIFITDRKKELIITAGGENISPTLIEGFIRQIIGVEQAVVIGDRQKYLVA
LVTVNADLFKLLPGQGYTHPLPKSMEEASTDKHFIAYIDSQMKDINSKLPNVSTIKKVKI
LPVEFQETGETSELTPTKKL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP847 (CHP847Q) /CSM/CH/CHP8-B/CHP847Q.Seq.d/                        821   0.0
VHQ345 (VHQ345Q) /CSM/VH/VHQ3-B/VHQ345Q.Seq.d/                        819   0.0
VHA335 (VHA335Q) /CSM/VH/VHA3-B/VHA335Q.Seq.d/                        819   0.0
CHN456 (CHN456Q) /CSM/CH/CHN4-C/CHN456Q.Seq.d/                        819   0.0
AHD785 (AHD785Q) /CSM/AH/AHD7-D/AHD785Q.Seq.d/                        819   0.0
CHF547 (CHF547Q) /CSM/CH/CHF5-B/CHF547Q.Seq.d/                        813   0.0
AHM812 (AHM812Q) /CSM/AH/AHM8-A/AHM812Q.Seq.d/                        813   0.0
CHG165 (CHG165Q) /CSM/CH/CHG1-C/CHG165Q.Seq.d/                        811   0.0
AHF157 (AHF157Q) /CSM/AH/AHF1-C/AHF157Q.Seq.d/                        811   0.0
VHB722 (VHB722Q) /CSM/VH/VHB7-A/VHB722Q.Seq.d/                        807   0.0
own update 2002.10. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   9e-07  11
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    32   3e-06  11
AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.    34   9e-05  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            38   9e-05  11
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    34   2e-04  11
CR974469|CR974469.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH73-64N5.    44   0.001  7
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   0.002  8
BX640474|BX640474.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-91D18.    34   0.002  11
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    32   0.004  14
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    32   0.004  9
dna update 2005.10.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE000516_2307(AE000516|pid:none) Mycobacterium tuberculosis CDC1...   103   5e-21
AM408590_2207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...   103   5e-21
BX842579_25(BX842579|pid:none) Mycobacterium tuberculosis H37Rv ...   103   5e-21
AL022602_30(AL022602|pid:none) Mycobacterium leprae cosmid B268.      102   1e-20
A87020(A87020) probable long-chain-fatty-acid-CoA ligase [import...   102   1e-20
CP000656_2943(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    99   9e-20
CP000480_4107(CP000480|pid:none) Mycobacterium smegmatis str. MC...    99   2e-19
CP000431_5975(CP000431|pid:none) Rhodococcus jostii RHA1, comple...    97   6e-19
CP000580_3258(CP000580|pid:none) Mycobacterium sp. JLS, complete...    95   2e-18
CP000854_3186(CP000854|pid:none) Mycobacterium marinum M, comple...    94   3e-18
protein update 2009. 4.11
PSORT 

 psg: 0.70  gvh: 0.47  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for CHP847 is cyt
5' end seq. ID CHP847F
5' end seq. 
>CHP847F.Seq
ACTGTTGGCCTACTGGNAATCTCTACCATACCTTTCAATNCGTTTATTCATCCCTTATCA
AAAACACACACACACACATATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAA
AAAAAAAAAAATANCAATAATAATAATANTTTTTTAAAAATAAAAAANTAAAAAAATAAA
ACCAANTTAAAAAATAATTTAATAATAATAATTTTTCNTTTTTAANGAAGACAACCAANT
AAAAAAAATAAAATANTAANTAAANTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 288
3' end seq. ID CHP847Z
3' end seq. 
>CHP847Z.Seq
NNNNNNNNNNTCGGTCATATCGATAAGGATGGTTTCATTTTCATCACCGATAGAAAGAAA
GAGTTAATCATTACAGCAGGTGGTGAAAATATTTCACCAACCTTGATTGAAGGTTTCATT
CGTCAAATCATTGGTGTTGAACAAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGTT
GCTTTGGTCACTGTCAATGCTGATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCAT
CCATTACCAAAATCAATGGAAGAAGCTTCAACAGATAAACATTTCATTGCCTATATTGAT
TCTCAAATGAAAGATATTAATTCAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAAA
ATTTTACCAGTTGAATTCCAAGAAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAA
TTAT
Length of 3' end seq. 424
Connected seq. ID CHP847P
Connected seq. 
>CHP847P.Seq
ACTGTTGGCCTACTGGNAATCTCTACCATACCTTTCAATNCGTTTATTCATCCCTTATCA
AAAACACACACACACACATATATATATAAAATTAATTTATTACTTTTTATTTGTCATAAA
AAAAAAAAAAATANCAATAATAATAATANTTTTTTAAAAATAAAAAANTAAAAAAATAAA
ACCAANTTAAAAAATAATTTAATAATAATAATTTTTCNTTTTTAANGAAGACAACCAANT
AAAAAAAATAAAATANTAANTAAANTTTAAAAAAAAAA----------TCGGTCATATCG
ATAAGGATGGTTTCATTTTCATCACCGATAGAAAGAAAGAGTTAATCATTACAGCAGGTG
GTGAAAATATTTCACCAACCTTGATTGAAGGTTTCATTCGTCAAATCATTGGTGTTGAAC
AAGCCGTAGTAATTGGTGATCGTCAAAAATATTTAGTTGCTTTGGTCACTGTCAATGCTG
ATTTATTCAAGTTATTACCAGGTCAAGGTTACACTCATCCATTACCAAAATCAATGGAAG
AAGCTTCAACAGATAAACATTTCATTGCCTATATTGATTCTCAAATGAAAGATATTAATT
CAAAACTTCCAAATGTTTCAACAATTAAAAAAGTTAAAATTTTACCAGTTGAATTCCAAG
AAACTGGTGAAACTTCTGAATTAACTCCAACTAAAAAATTAT
Length of connected seq. 692
Full length Seq ID -
Full length Seq. -
Length of full length seq. -