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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP843
Library CH
(Link to library)
Clone ID CHP843
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID CHP843P
(Link to Original site)
Representative DNA sequence 
>CHP843 (CHP843Q) /CSM/CH/CHP8-B/CHP843Q.Seq.d/
CTGTTGGCCTACTGGNATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATT
TATTAAATTATTATTTATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGT
ATATATATTCTTGTATAAATAAAAAAAAAAXXXXXXXXXXGAAGCCGGTGACTATGTTAT
CAATCTCACTTTAGATGGTGACAACGTCAATGGTTTCCCAAAGACTGTTACCGTTAAACC
AGCCCCATCCGCTGAACACTCTTATGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGATAA
TGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGTACCGATGG
TGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGT
TACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTA
CAGTGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAATG
CATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCTGC
TAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCAC
TGGTCCAGCTGAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
vgllxsyhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---EAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAV
DTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYSVNVTLRGNP
IKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAE
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxltifiylfikllfiy*iiiy*vv*ttfq*ilifciyilv*ikkk---

---EAGDYVINLTLDGDNVNGFPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAV
DTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYSVNVTLRGNP
IKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAE

Frame B:
cwptgilpflfiyllnyylfikllfielcklpsnkf*yfvyiflyk*kk---

---kpvtmlsisl*mvttsmvsqrllplnqphplntlmlkvkv*skylimpqlnslfspl
tlkvllvpmvvihlkslsmvqmv*slmpklpitmtvlmvlsmmpqlkvttvlmspsvviq
skicqsmsnalkvpmvkihhsvhsllpsllkirkvklkpmvvinlkslslvqlk

Frame C:
vgllxsyhfylfiy*IIIYLLNYYLLSCVNYLPINFNILYIYSCINKKK---

---sr*lcyqshfrw*qrqwfpkdcyr*tspir*tllc*r*rfsqsi**cps*ihyfrr*
h*rccsyrww*si*sryqwsrwfsr*cqsyr*q*rylwccl*cps*r*lqc*chppw*sn
qkyanrcqmh*rcqw*rfiirfihfyrrc*k*er*s*nlww**i*slyhwss*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP843 (CHP843Q) /CSM/CH/CHP8-B/CHP843Q.Seq.d/                       1019   0.0
VHQ144 (VHQ144Q) /CSM/VH/VHQ1-B/VHQ144Q.Seq.d/                       1011   0.0
VHP113 (VHP113Q) /CSM/VH/VHP1-A/VHP113Q.Seq.d/                       1011   0.0
VHO119 (VHO119Q) /CSM/VH/VHO1-A/VHO119Q.Seq.d/                       1011   0.0
VHL789 (VHL789Q) /CSM/VH/VHL7-D/VHL789Q.Seq.d/                       1011   0.0
VHI465 (VHI465Q) /CSM/VH/VHI4-C/VHI465Q.Seq.d/                       1011   0.0
VHI457 (VHI457Q) /CSM/VH/VHI4-C/VHI457Q.Seq.d/                       1011   0.0
VHI292 (VHI292Q) /CSM/VH/VHI2-D/VHI292Q.Seq.d/                       1011   0.0
VHD184 (VHD184Q) /CSM/VH/VHD1-D/VHD184Q.Seq.d/                       1011   0.0
VHC802 (VHC802Q) /CSM/VH/VHC8-A/VHC802Q.Seq.d/                       1011   0.0
own update 2003. 5.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15430|X15430.1 Dictyostelium discoideum mRNA for gelation factor.  1011   0.0    3
AQ543434|AQ543434.1 RPCI-11-349G2.TV RPCI-11 Homo sapiens genomic clone RPCI-11-349G2, genomic survey sequence.    48   0.24   1
AL356308|AL356308.16 Human DNA sequence from clone RP11-475L16 on chromosome 10.    48   0.24   1
AL772346|AL772346.5 Mouse DNA sequence from clone RP23-413E7 on chromosome 4.    48   0.24   1
CR940353|CR940353.1 Theileria annulata genomic DNA chromosome 4.    36   0.43   2
AC079798|AC079798.2 Homo sapiens chromosome 4 clone RP11-661K10, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40   0.45   4
AC123148|AC123148.5 Rattus norvegicus clone CH230-43D20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   1.8    2
AC119537|AC119537.5 Rattus norvegicus clone CH230-426J14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   1.8    2
CC917029|CC917029.1 t097n16ba.f1 TAMBT Bos taurus genomic clone t097n16ba, genomic survey sequence.    38   1.9    2
BM852082|BM852082.1 K-EST0133106 S21SNU520 Homo sapiens cDNA clone S21SNU520-46-C08 5', mRNA sequence.    44   3.7    1
dna update 2005.10.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...    87   3e-16
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr...    77   4e-13
AK131179_1(AK131179|pid:none) Mus musculus mRNA for mFLJ00343 pr...    68   2e-10
BC151024_1(BC151024|pid:none) Mus musculus filamin, alpha, mRNA ...    68   2e-10
AL807376_2(AL807376|pid:none) Mouse DNA sequence from clone RP23...    68   2e-10
FJ416060_1(FJ416060|pid:none) Rattus norvegicus filamin alpha (F...    68   2e-10
AL807376_1(AL807376|pid:none) Mouse DNA sequence from clone RP23...    68   2e-10
AL807376_3(AL807376|pid:none) Mouse DNA sequence from clone RP23...    68   2e-10
(Q8BTM8) RecName: Full=Filamin-A; AltName: Full=Alpha-filamin; A...    68   2e-10
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co...    68   2e-10
protein update 2009. 4.11
PSORT 

 psg: 0.89  gvh: 0.45  alm: 0.36  top: 0.47  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHP843 is cyt
5' end seq. ID CHP843F
5' end seq. 
>CHP843F.Seq
CTGTTGGCCTACTGGNATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATT
TATTAAATTATTATTTATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGT
ATATATATTCTTGTATAAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 160
3' end seq. ID CHP843Z
3' end seq. 
>CHP843Z.Seq
NNNNNNNNNNGAAGCCGGTGACTATGTTATCAATCTCACTTTAGATGGTGACAACGTCAA
TGGTTTCCCAAAGACTGTTACCGTTAAACCAGCCCCATCCGCTGAACACTCTTATGCTGA
AGGTGAAGGTTTAGTCAAAGTATTTGATAATGCCCCAGCTGAATTCACTATTTTCGCCGT
TGACACTAAAGGTGTTGCTCGTACCGATGGTGGTGATCCATTTGAAGTCGCTATCAATGG
TCCAGATGGTTTAGTCGTTGATGCCAAAGTTACCGATAACAATGACGGTACTTATGGTGT
TGTCTATGATGCCCCAGTTGAAGGTAACTACAGTGTTAATGTCACCCTCCGTGGTAATCC
AATCAAAAATATGCCAATCGATGTCAAATGCATTGAAGGTGCCAATGGTGAAGATTCATC
ATTCGGTTCATTCACTTTTACCGTCGCTGCTAAAAATAAGAAAGGTGAAGTTAAAACCTA
TGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAAG
Length of 3' end seq. 524
Connected seq. ID CHP843P
Connected seq. 
>CHP843P.Seq
CTGTTGGCCTACTGGNATCTTACCATTTTTATTTATTTATTTATTAAATTATTATTTATT
TATTAAATTATTATTTATTGAGTTGTGTAAACTACCTTCCAATAAATTTTAATATTTTGT
ATATATATTCTTGTATAAATAAAAAAAAAA----------GAAGCCGGTGACTATGTTAT
CAATCTCACTTTAGATGGTGACAACGTCAATGGTTTCCCAAAGACTGTTACCGTTAAACC
AGCCCCATCCGCTGAACACTCTTATGCTGAAGGTGAAGGTTTAGTCAAAGTATTTGATAA
TGCCCCAGCTGAATTCACTATTTTCGCCGTTGACACTAAAGGTGTTGCTCGTACCGATGG
TGGTGATCCATTTGAAGTCGCTATCAATGGTCCAGATGGTTTAGTCGTTGATGCCAAAGT
TACCGATAACAATGACGGTACTTATGGTGTTGTCTATGATGCCCCAGTTGAAGGTAACTA
CAGTGTTAATGTCACCCTCCGTGGTAATCCAATCAAAAATATGCCAATCGATGTCAAATG
CATTGAAGGTGCCAATGGTGAAGATTCATCATTCGGTTCATTCACTTTTACCGTCGCTGC
TAAAAATAAGAAAGGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCAC
TGGTCCAGCTGAAG
Length of connected seq. 664
Full length Seq ID -
Full length Seq. -
Length of full length seq. -