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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP837
Library CH
(Link to library)
Clone ID CHP837
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16405-1
Original site URL
Representative seq. ID CHP837P
(Link to Original site)
Representative DNA sequence 
>CHP837 (CHP837Q) /CSM/CH/CHP8-B/CHP837Q.Seq.d/
CTGTTGGCCTACTGNTTCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCT
CTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCA
TTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGA
TATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTA
ATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAA
CCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACAT
TGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTA
TGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTA
TATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGAT
ATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCC
ATTGATGTAAATAAACCTTTXXXXXXXXXXTAGAGATGAAAGTAGAGAGAGTTCACTCTT
TGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACC
AATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAAT
TCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGT
TCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGA
TTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTC
AAGTGTGAAAAATACATCAGGAGTATTATATCTCCTATTTAACTCAACATCATTTCAATA
TAATGTCACAATTGAAGAAATTAAATTATCTCCATCACCAAACGTTAGTCAAANAGATGT
TGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGT
TGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCCTTTCGTGTGAA
AAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCACAT
ATGTGTAAAATTAAAACTAACTAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
llayxfylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISG
YSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERH
CLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGED
IVITGSYLRLFGGPNFLINSIDVNKP---

---RDESRESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTD
IXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSG
VLYLLFNSTSFQYNVTIEEIKLSPSPNVSQXDVETKSSKPSNGLIIGSTIGSVGGALAIG
ALAYYFKIPFRVKKFIGKKF*kkkckfkitnhicvklkltkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
llayxfylikikfs*nn*islf*fsfikiikkpnsk*KKSLIKMEKKIILLILFLFFISG
YSMNPPTPIDAIYDDKSFTLIFNSNLPYSTRLILYKNEKEPRTEMAPNYFNCSLVDGERH
CLFHSDEPFSRLWGSIDSKVCVRDKSNTVEDCTFDASGLVYYPKVYNLKYSKKPKTSGED
IVITGSYLRLFGGPNFLINSIDVNKP---

---*r*k*reftlcynihwssfrtkynidlyktndfrnsnh*k*n*kryfsnnswl*fyr
yxqcklnsfirncssfm*frm*fitk*nt****fk*n*yyk**y*lfimpfrfkcekyir
siispi*lniisi*chn*rn*iisitkr*sxrc*n*iiqtikwfnnrfynw*cwwcscyr
csclll*ntlscekiyr*kilkkkm*i*nhkshmckiktn*kk

Frame B:
cwptxsi**klnfpkiikflffnfll*kllksqiqnkknh**kwkrk*yy*fyfcslyqd
iq*ilqhq*mqymminhlh*flivishilpv*fciktkknpelkwhqiisivl*lmerdi
vysiqmnhsqdygvv*tvryvleinqillrivhlmlrv*yiiqkyti*nivknqkhlvki
*sllahi*dylvvlislliplm*inl---

---RDESRESSLFVTTFIGVRSGPSTTLTYIKPMISEIPTIENKIEKGILAIIRGYSFTD
IXNASLTVSSETVPLSCNLECSLSPNEILDDSDSSETNITNSNTDCLSCHSGSSVKNTSG
VLYLLFNSTSFQYNVTIEEIKLSPSPNVSQXDVETKSSKPSNGLIIGSTIGSVGGALAIG
ALAYYFKIPFRVKKFIGKKF*kkkckfkitnhicvklkltkkk

Frame C:
vgllxlfnkn*iflk*lnfsfliffykny*kakfkikkiidkngkennitdfifvlyiri
fnessntnrcni***iiyinf***spifypfnfv*krkrtqn*ngtklfqlfss*wretl
fipfr*tilkimg*yrq*gmc*r*ikyc*glyi*cfgfsilsksiqfei**ktkniw*ry
shywlifkiiwws*fpy*fh*ck*tf---

---emkvervhsllqhslefvqdqvqh*pi*nq*fqkfqplkiklkkvf*q*fvvivlqi
xsmqa*qfhqklflfhvi*nvvyhqmkylmiviqvklilqivilivyhaipvqv*kihqe
yyisyltqhhfnimsqlkklnylhhqtlvkxmlklnhpnhqmv***vlqlvvlvvlllsv
llpitlkypfv*knl*vknfkkknvnlksqityv*n*n*lkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP837 (CHP837Q) /CSM/CH/CHP8-B/CHP837Q.Seq.d/                       1261   0.0
SHC243 (SHC243Q) /CSM/SH/SHC2-B/SHC243Q.Seq.d/                       1106   0.0
CHL785 (CHL785Q) /CSM/CH/CHL7-D/CHL785Q.Seq.d/                       1106   0.0
AHR269 (AHR269Q) /CSM/AH/AHR2-C/AHR269Q.Seq.d/                       1106   0.0
AHL496 (AHL496Q) /CSM/AH/AHL4-D/AHL496Q.Seq.d/                       1106   0.0
AHH604 (AHH604Q) /CSM/AH/AHH6-A/AHH604Q.Seq.d/                       1106   0.0
AHC117 (AHC117Q) /CSM/AH/AHC1-A/AHC117Q.Seq.d/                       1106   0.0
AFE214 (AFE214Q) /CSM/AF/AFE2-A/AFE214Q.Seq.d/                       1106   0.0
CHO549 (CHO549Q) /CSM/CH/CHO5-C/CHO549Q.Seq.d/                       1104   0.0
AHO612 (AHO612Q) /CSM/AH/AHO6-A/AHO612Q.Seq.d/                       1102   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.  1106   0.0    4
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.  1106   0.0    5
AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    80   3e-32  6
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    46   2e-05  15
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   8e-04  24
BX957222|BX957222.1 Methanococcus maripaludis S2 complete genome; segment 4/5.    34   9e-04  14
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    34   0.002  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.002  21
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   0.002  13
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        32   0.003  25
dna update 2005.10.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A54280(A54280) cell differentiation protein LagC precursor - sli...   335   3e-90
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   325   2e-87
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   325   2e-87
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   325   2e-87
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   325   2e-87
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   325   2e-87
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   324   3e-87
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   312   2e-83
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   312   2e-83
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   312   2e-83
protein update 2009. 4.11
PSORT 

 psg: 1.02  gvh: 0.77  alm: 0.34  top: 0.07  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for CHP837 is exc
5' end seq. ID CHP837F
5' end seq. 
>CHP837F.Seq
CTGTTGGCCTACTGNTTCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCT
CTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCA
TTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGA
TATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTA
ATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAA
CCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACAT
TGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTA
TGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTA
TATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGAT
ATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCC
ATTGATGTAAATAAACCTTTNNNNNNNNNN
Length of 5' end seq. 630
3' end seq. ID CHP837Z
3' end seq. 
>CHP837Z.Seq
NNNNNNNNNNTAGAGATGAAAGTAGAGAGAGTTCACTCTTTGTTACAACATTCATTGGAG
TTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACCAATGATTTCAGAAATTCCAA
CCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAATTCGTGGTTATAGTTTTACAG
ATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGTTCCTCTTTCATGTAATTTAG
AATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGATTCAAGTGAAACTAATATTA
CAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTCAAGTGTGAAAAATACATCAG
GAGTATTATATCTCCTATTTAACTCAACATCATTTCAATATAATGTCACAATTGAAGAAA
TTAAATTATCTCCATCACCAAACGTTAGTCAAANAGATGTTGAAACTAAATCATCCAAAC
CATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGTTGGTGGTGCTCTTGCTATCG
GTGCTCTTGCCTATTACTTTAAAATACCCTTTCGTGTGAAAAAATTTATAGGTAAAAAAT
TTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCACATATGTGTAAAATTAAAACTAA
CTAAAAAAAAAA
Length of 3' end seq. 672
Connected seq. ID CHP837P
Connected seq. 
>CHP837P.Seq
CTGTTGGCCTACTGNTTCTATTTAATAAAAATTAAATTTTCCTAAAATAATTAAATTTCT
CTTTTTTAATTTTCTTTTATAAAAATTATTAAAAAGCCAAATTCAAAATAAAAAAAATCA
TTGATAAAAATGGAAAAGAAAATAATATTACTGATTTTATTTTTGTTCTTTATATCAGGA
TATTCAATGAATCCTCCAACACCAATAGATGCAATATATGATGATAAATCATTTACATTA
ATTTTTAATAGTAATCTCCCATATTCTACCCGTTTAATTTTGTATAAAAACGAAAAAGAA
CCCAGAACTGAAATGGCACCAAATTATTTCAATTGTTCTCTAGTTGATGGAGAGAGACAT
TGTTTATTCCATTCAGATGAACCATTCTCAAGATTATGGGGTAGTATAGACAGTAAGGTA
TGTGTTAGAGATAAATCAAATACTGTTGAGGATTGTACATTTGATGCTTCGGGTTTAGTA
TATTATCCAAAAGTATACAATTTGAAATATAGTAAAAAACCAAAAACATCTGGTGAAGAT
ATAGTCATTACTGGCTCATATTTAAGATTATTTGGTGGTCCTAATTTCCTTATTAATTCC
ATTGATGTAAATAAACCTTT----------TAGAGATGAAAGTAGAGAGAGTTCACTCTT
TGTTACAACATTCATTGGAGTTCGTTCAGGACCAAGTACAACATTGACCTATATAAAACC
AATGATTTCAGAAATTCCAACCATTGAAAATAAAATTGAAAAAGGTATTTTAGCAATAAT
TCGTGGTTATAGTTTTACAGATATTNTCAATGCAAGCTTAACAGTTTCATCAGAAACTGT
TCCTCTTTCATGTAATTTAGAATGTAGTTTATCACCAAATGAAATACTTGATGATAGTGA
TTCAAGTGAAACTAATATTACAAATAGTAATACTGATTGTTTATCATGCCATTCCGGTTC
AAGTGTGAAAAATACATCAGGAGTATTATATCTCCTATTTAACTCAACATCATTTCAATA
TAATGTCACAATTGAAGAAATTAAATTATCTCCATCACCAAACGTTAGTCAAANAGATGT
TGAAACTAAATCATCCAAACCATCAAATGGTTTAATAATAGGTTCTACAATTGGTAGTGT
TGGTGGTGCTCTTGCTATCGGTGCTCTTGCCTATTACTTTAAAATACCCTTTCGTGTGAA
AAAATTTATAGGTAAAAAATTTTAAAAAAAAAAATGTAAATTTAAAATCACAAATCACAT
ATGTGTAAAATTAAAACTAACTAAAAAAAAAA
Length of connected seq. 1282
Full length Seq ID -
Full length Seq. -
Length of full length seq. -