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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFH271
Library AF
(Link to library)
Clone ID AFH271
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02482-1
Original site URL
Representative seq. ID AFH271Z
(Link to Original site)
Representative DNA sequence 
>AFH271 (AFH271Q) /CSM/AF/AFH2-C/AFH271Q.Seq.d/
XXXXXXXXXXTCAATCTTTTCTCTGCNTATTGATGATTTTCATGGTGTAGTGNTNNCAAC
NATTTCGCTATAATTAATNGGTNTAACTNTATNANTNNNAATCCAANAGAAATNTTCAGC
GNCCTCANTTCTCATTTNT
sequence update 2001. 6. 2
Translated Amino Acid sequence 
---nlfsay**FSWCSXXNXFAIINXXNXXXXNPXEXFSXLXSHX
Translated Amino Acid sequence (All Frames) 
Frame A:
---qsflcxlmifmv*xxqxfryn*xv*lyxxxsxrnxqrpxfsf


Frame B:
---nlfsay**FSWCSXXNXFAIINXXNXXXXNPXEXFSXLXSHX


Frame C:
---ifslxiddfhgvvxxtisl*lxgxtxxxxiqxkxsaxsxlix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFH271 (AFH271Q) /CSM/AF/AFH2-C/AFH271Q.Seq.d/                        151   3e-36
AFC434 (AFC434Q) /CSM/AF/AFC4-B/AFC434Q.Seq.d/                        103   6e-22
CFB521 (CFB521Q) /CSM/CF/CFB5-A/CFB521Q.Seq.d/                         96   2e-19
SFE275 (SFE275Q) /CSM/SF/SFE2-D/SFE275Q.Seq.d/                         84   6e-16
AHL874 (AHL874Q) /CSM/AH/AHL8-D/AHL874Q.Seq.d/                         32   1.9
SHA462 (SHA462Q) /CSM/SH/SHA4-C/SHA462Q.Seq.d/                         32   1.9
CHR560 (CHR560Q) /CSM/CH/CHR5-C/CHR560Q.Seq.d/                         32   1.9
CHQ261 (CHQ261Q) /CSM/CH/CHQ2-C/CHQ261Q.Seq.d/                         32   1.9
AHP219 (AHP219Q) /CSM/AH/AHP2-A/AHP219Q.Seq.d/                         32   1.9
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF508975|AF508975.1 Dictyostelium discoideum SslA1 (sslA1) mRNA, complete cds.   103   6e-19  1
AY094176|AY094176.1 Dictyostelium discoideum SslA3 (sslA3) gene, complete cds.    84   5e-13  1
BX248522|BX248522.9 Zebrafish DNA sequence from clone CH211-113B2 in linkage group 14.    42   1.8    1
dna update 2004. 4. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF508975_1(AF508975|pid:none) Dictyostelium discoideum SslA1 (ss...    49   4e-05
(Q54YC3) RecName: Full=Protein secondary enhancer of smlA;             49   4e-05
protein update 2008.11.21
PSORT 

 psg: 0.82  gvh: 0.40  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for AFH271 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFH271Z
3' end seq. 
>AFH271Z.Seq
----------TCAATCTTTTCTCTGCNTATTGATGATTTTCATGGTGTAGTGNTNNCAAC
NATTTCGCTATAATTAATNGGTNTAACTNTATNANTNNNAATCCAANAGAAATNTTCAGC
GNCCTCANTTCTCATTTNT
Length of 3' end seq. 129
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -