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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP829
Library CH
(Link to library)
Clone ID CHP829
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHP829P
(Link to Original site)
Representative DNA sequence 
>CHP829 (CHP829Q) /CSM/CH/CHP8-B/CHP829Q.Seq.d/
TTGGCCTACTGGAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTT
TAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGAT
TTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATNCATCCT
TTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTG
AAGATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATG
TAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGANCATC
AAAGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCAACAAATT
ACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAGTTT
CAAAAGTTGAAGAAGCATTTTCAAGXXXXXXXXXXTCATAAGATTGTAACTCAAATGGGA
AATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTA
CAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCC
TTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAA
CTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAAT
GAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAA
CAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAG
AAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAA
CTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTA
GTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACAT
GAACAACAAATNCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATT
AGAACAAGAACAAAACAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
glleiyyqitifsflsf*slnnrnnkn*y*kkgtlkkkrflflflklv*LKMYSKKYXSF
VIVLILSCIISTCXSNQISEDXGKAINQKLNENIEKVEXVVVQFXNVANQVIEXLKVXHQ
RQELLGEVKHDSLXXSATNYIWGLLDKIQSYLPKDNNKVSKVEEAFS---

---HKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDA
AKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKV
IKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPD
QIKNQLKNIQHEQQXPRTTR*iksrkkstiirtrtkqk
Translated Amino Acid sequence (All Frames) 
Frame A:
laywkftik*lfflfflfkv*iieiikinikkker*kkkdfffff*nwyn*kcivknxhp
l**y*fyhvsfqhvhlikflkmxvkqlikn*mkilkklxm*lxnlxmlqikllxn*klxi
kdkny*xk*nmih*xtlqqitfgdylikfkviyqkttikfqklkkhfq---

---s*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trc
c*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*s
yqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*
pn*ksikkyst*ttnxknnkin*ikkkinny*nknktki

Frame B:
wptgnllsnnyfffsfflkfk**k**klilkkrnvkkkkisfsffeigiiknv**kixil
cnsidfimyhfnmxi*snf*rxg*sn*skik*ky*ks*xcscxi*xcckssy*xiks*xs
ktriirxskt*fixxlcnklhlgit**nsklftkrqq*sfks*rsifk---

---HKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDA
AKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKV
IKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPD
QIKNQLKNIQHEQQXPRTTR*iksrkkstiirtrtkqk

Frame C:
glleiyyqitifsflsf*slnnrnnkn*y*kkgtlkkkrflflflklv*LKMYSKKYXSF
VIVLILSCIISTCXSNQISEDXGKAINQKLNENIEKVEXVVVQFXNVANQVIEXLKVXHQ
RQELLGEVKHDSLXXSATNYIWGLLDKIQSYLPKDNNKVSKVEEAFS---

---irl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkml
lnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlkl
sknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnllt
klkin*kifnmnnkxqeqqdklnqeknqqlleqeqnkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP829 (CHP829Q) /CSM/CH/CHP8-B/CHP829Q.Seq.d/                        876   0.0
CHP887 (CHP887Q) /CSM/CH/CHP8-D/CHP887Q.Seq.d/                        603   e-171
CHP459 (CHP459Q) /CSM/CH/CHP4-C/CHP459Q.Seq.d/                        603   e-171
CHP319 (CHP319Q) /CSM/CH/CHP3-A/CHP319Q.Seq.d/                        599   e-170
CHP675 (CHP675Q) /CSM/CH/CHP6-D/CHP675Q.Seq.d/                        593   e-168
CHP496 (CHP496Q) /CSM/CH/CHP4-D/CHP496Q.Seq.d/                        593   e-168
CHP477 (CHP477Q) /CSM/CH/CHP4-D/CHP477Q.Seq.d/                        593   e-168
CHP302 (CHP302Q) /CSM/CH/CHP3-A/CHP302Q.Seq.d/                        593   e-168
CHP287 (CHP287Q) /CSM/CH/CHP2-D/CHP287Q.Seq.d/                        593   e-168
CHP113 (CHP113Q) /CSM/CH/CHP1-A/CHP113Q.Seq.d/                        593   e-168
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   547   0.0    9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   1e-32  17
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    46   3e-21  26
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-14  22
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   5e-13  33
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    38   2e-12  27
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-12  25
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   3e-11  18
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   3e-11  19
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    48   4e-10  17
dna update 2005.10.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   239   1e-61
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    35   3.7
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   3.7
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   6.2
protein update 2009. 4.11
PSORT 

 psg: 0.98  gvh: 0.71  alm: 0.47  top: 0.20  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHP829 is nuc
5' end seq. ID CHP829F
5' end seq. 
>CHP829F.Seq
TTGGCCTACTGGAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTT
TAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGAT
TTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATNCATCCT
TTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTG
AAGATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATG
TAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGANCATC
AAAGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCAACAAATT
ACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAGTTT
CAAAAGTTGAAGAAGCATTTTCAAGNNNNNNNNNN
Length of 5' end seq. 515
3' end seq. ID CHP829Z
3' end seq. 
>CHP829Z.Seq
NNNNNNNNNNTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCA
ATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATA
TCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATG
CTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAG
AACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAAC
AAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAG
TTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACG
ATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTA
AAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTG
ACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATNCCAAGAACAACAA
GATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAACAAAAATA
Length of 3' end seq. 658
Connected seq. ID CHP829P
Connected seq. 
>CHP829P.Seq
TTGGCCTACTGGAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTT
TAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAAGAT
TTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATNCATCCT
TTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTG
AAGATGNGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAANATG
TAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGANCATC
AAAGACAAGAATTATTAGGNGAAGTAAAACATGATTCATTAANANACTCTGCAACAAATT
ACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAGTTT
CAAAAGTTGAAGAAGCATTTTCAAG----------TCATAAGATTGTAACTCAAATGGGA
AATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTA
CAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCC
TTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAA
CTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAAT
GAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAA
CAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAG
AAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAA
CTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTA
GTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACAT
GAACAACAAATNCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATT
AGAACAAGAACAAAACAAAAATA
Length of connected seq. 1153
Full length Seq ID -
Full length Seq. -
Length of full length seq. -