>CHP827 (CHP827Q) /CSM/CH/CHP8-B/CHP827Q.Seq.d/
ACTGTTGGCCTACTGGTATTAAACAATACTTTGACACATTACTTTATCAAAAAAAAAANT
AAAAATAAAATANCTAAAATAATAANGATTAATTTATTAATAAATCATTATTAGTTTTTT
CACCCNTTAAAAAAAAAAXXXXXXXXXX

TVGLLVLNNTLTHYFIKKKXKNKIXKIIXINLLINHY*ffhplkk---

Frame A:
TVGLLVLNNTLTHYFIKKKXKNKIXKIIXINLLINHY*ffhplkk---


Frame B:
llaywy*til*hitlskkkxkikxlk**xliy**iiisfftx*kk---


Frame C:
cwptgikqyfdtllyqkkx*k*nx*nnxd*finksllvfspxkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP827 (CHP827Q) /CSM/CH/CHP8-B/CHP827Q.Seq.d/                         98   4e-20
SSE467 (SSE467Q) /CSM/SS/SSE4-C/SSE467Q.Seq.d/                         94   7e-19
CHF411 (CHF411Q) /CSM/CH/CHF4-A/CHF411Q.Seq.d/                         56   1e-07
VFL185 (VFL185Q) /CSM/VF/VFL1-D/VFL185Q.Seq.d/                         52   2e-06
SFG161 (SFG161Q) /CSM/SF/SFG1-C/SFG161Q.Seq.d/                         52   2e-06
SFB868 (SFB868Q) /CSM/SF/SFB8-C/SFB868Q.Seq.d/                         52   2e-06
AFK153 (AFK153Q) /CSM/AF/AFK1-C/AFK153Q.Seq.d/                         52   2e-06
AFI363 (AFI363Q) /CSM/AF/AFI3-C/AFI363Q.Seq.d/                         52   2e-06
AHD352 (AHD352Q) /CSM/AH/AHD3-C/AHD352Q.Seq.d/                         50   9e-06
SHB555 (SHB555Q) /CSM/SH/SHB5-C/SHB555Q.Seq.d/                         46   1e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    94   2e-28  2
AQ702351|AQ702351.1 HS_5431_A1_D01_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=1007 Col=1 Row=G, genomic survey sequence.    36   0.004  2
CJ480380|CJ480380.1 Macaca fascicularis mRNA, clone: QtrA-15861, 5' end, expressed in brain temporal lobe.    48   0.045  1
CJ485568|CJ485568.1 Macaca fascicularis mRNA, clone: QtsA-13157, 5' end, expressed in testis.    48   0.045  1
CJ449574|CJ449574.1 Macaca fascicularis mRNA, clone: QflA-15094, 5' end, expressed in brain frontal lobe.    48   0.045  1
AP001549|AP001549.3 Homo sapiens genomic DNA, chromosome 18q21 clone:RP11-866E20, WORKING DRAFT SEQUENCE, 18 unordered pieces.    42   0.073  4
CK406764|CK406764.1 AUF_IfLvr_212_c09 Ictalurus furcatus liver cDNA library Ictalurus furcatus cDNA 5', mRNA sequence.    34   0.082  2
CJ449799|CJ449799.1 Macaca fascicularis mRNA, clone: QflA-15331, 5' end, expressed in brain frontal lobe.    44   0.087  2
AJ511533|AJ511533.1 Candida glabrata complete mitochondrial genome.    34   0.10   4
BG207453|BG207453.1 RST26934 Athersys RAGE Library Homo sapiens cDNA, mRNA sequence.    46   0.18   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 109,113,431

 psg: 0.87  gvh: 0.36  alm: 0.48  top: 0.90  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHP827 is mit

>CHP827F.Seq
ACTGTTGGCCTACTGGTATTAAACAATACTTTGACACATTACTTTATCAAAAAAAAAANT
AAAAATAAAATANCTAAAATAATAANGATTAATTTATTAATAAATCATTATTAGTTTTTT
CACCCNTTAAAAAAAAAANNNNNNNNNN