>CHP826 (CHP826Q) /CSM/CH/CHP8-B/CHP826Q.Seq.d/
XXXXXXXXXXTNTTCATCATCAAATAATACCACCACAACTACTGCCACTACTACTTCTCC
TACTACTACTGCAACAACAACAACAACAACAGCAACAACATCAACAACAGATGAATCAGA
AACAACAAATTCAACAACACCAACATCAGCAACATCAACACCAGATTCAATGATTACACC
AACTAAATCAAAAGGATCATNCAAATAAATTGAATTCAAAATAA

---SSSNNTTTTTATTTSPTTTATTTTTTATTSTTDESETTNSTTPTSATSTPDSMITPT
KSKGSXK*iefki

Frame A:
---xhhqiippqllpllllllllqqqqqqqqqhqqqmnqkqqiqqhqhqqhqhqiq*lhq
lnqkdhxnklnsk*


Frame B:
---fiik*yhhnychyyfsyyycnnnnnnsnninnr*irnnkfnntnisnintrfndytn
*ikrixqin*iqn


Frame C:
---SSSNNTTTTTATTTSPTTTATTTTTTATTSTTDESETTNSTTPTSATSTPDSMITPT
KSKGSXK*iefki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP826 (CHP826Q) /CSM/CH/CHP8-B/CHP826Q.Seq.d/                        121   5e-27
SHD202 (SHD202Q) /CSM/SH/SHD2-A/SHD202Q.Seq.d/                        105   3e-22
CHJ474 (CHJ474Q) /CSM/CH/CHJ4-D/CHJ474Q.Seq.d/                        105   3e-22
SFE765 (SFE765Q) /CSM/SF/SFE7-C/SFE765Q.Seq.d/                         74   1e-12
SFA609 (SFA609Q) /CSM/SF/SFA6-A/SFA609Q.Seq.d/                         52   4e-06
VHO680 (VHO680Q) /CSM/VH/VHO6-D/VHO680Q.Seq.d/                         46   2e-04
VHK555 (VHK555Q) /CSM/VH/VHK5-C/VHK555Q.Seq.d/                         46   2e-04
VHG393 (VHG393Q) /CSM/VH/VHG3-D/VHG393Q.Seq.d/                         46   2e-04
VHG338 (VHG338Q) /CSM/VH/VHG3-B/VHG338Q.Seq.d/                         46   2e-04
SHI844 (SHI844Q) /CSM/SH/SHI8-B/SHI844Q.Seq.d/                         46   2e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC114265|AC114265.2 Dictyostelium discoideum chromosome 2 map 4520461-4544940 strain AX4, complete sequence.   115   1e-41  4
AC168400|AC168400.1 Strongylocentrotus purpuratus clone R3-4002J19, WORKING DRAFT SEQUENCE, 30 unordered pieces.    46   1e-04  4
CT027634|CT027634.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   2e-04  2
AC168365|AC168365.1 Strongylocentrotus purpuratus clone R3-4013M22, WORKING DRAFT SEQUENCE, 20 unordered pieces.    38   2e-04  2
AZ149014|AZ149014.1 SP_0020_B1_D12_T7 Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=20 Col=23 Row=H, DNA sequence.    44   8e-04  2
AC157975|AC157975.1 Strongylocentrotus purpuratus clone R3-4002B2, WORKING DRAFT SEQUENCE, 13 unordered pieces.    42   0.001  4
AC168415|AC168415.1 Strongylocentrotus purpuratus clone R3-4002B23, WORKING DRAFT SEQUENCE, 20 unordered pieces.    50   0.001  5
BX545847|BX545847.9 Zebrafish DNA sequence from clone RP71-14M1 in linkage group 19.    50   0.002  2
AC157834|AC157834.1 Strongylocentrotus purpuratus clone R3-4002I3, WORKING DRAFT SEQUENCE, 12 unordered pieces.    42   0.003  3
AC146995|AC146995.2 Arbacia punctulata clone BAP-66L2, WORKING DRAFT SEQUENCE, 9 unordered pieces.    42   0.003  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 73,099,131

 psg: 0.86  gvh: 0.41  alm: 0.65  top: 0.27  tms: 0.00  mit: 0.60  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: vacuolar

>> prediction for CHP826 is mit

>CHP826Z.Seq
NNNNNNNNNNTNTTCATCATCAAATAATACCACCACAACTACTGCCACTACTACTTCTCC
TACTACTACTGCAACAACAACAACAACAACAGCAACAACATCAACAACAGATGAATCAGA
AACAACAAATTCAACAACACCAACATCAGCAACATCAACACCAGATTCAATGATTACACC
AACTAAATCAAAAGGATCATNCAAATAAATTGAATTCAAAATAA