>CHP817 (CHP817Q) /CSM/CH/CHP8-A/CHP817Q.Seq.d/
CTGTTGGCCTACTGGNAAATTTTCGAAAAAAAATCTATTTCGTTAAAATAAATAAATAAT
AATAATTAAATAAAATAGTAAAAATAATAATAATAATAAAATTGAAACGACAAATAATTA
AAATCAATGTACTATTGTAGTTGTTGTTTTTGCTATTAAAAACATATATCTATTTCTTTT
ACTAAATTTTTTTTTTTTTTTTTTTCCAAAAAAAAAATNAAAAAAATNGGGGAANAAAAA
AAAGXXXXXXXXXXCATAGAGATTTAAAGAGTCATAATCTTTTAGTTGATGAACNTTATA
GAGNTAAAATTTCAGATTTTGGTCTTTCGACTAGATTTAAGAAACATTTAGATAAAAAGN
CTGCAA

cwptgkfskknlfr*nk*iiiik*nsknnnnnkiettnn*NQCTIVVVVFAIKNIYLFLL
LNFFFFFFPKKKXKKXGXKKK---

---HRDLKSHNLLVDEXYRXKISDFGLSTRFKKHLDKKXA

Frame A:
llaywxifekksislk*innnn*ik**k*****n*ndk*lksmyycsccfcy*khisisf
tkffffffskkkxkkxgexkk---

---HRDLKSHNLLVDEXYRXKISDFGLSTRFKKHLDKKXA

Frame B:
cwptgkfskknlfr*nk*iiiik*nsknnnnnkiettnn*NQCTIVVVVFAIKNIYLFLL
LNFFFFFFPKKKXKKXGXKKK---

---iei*rviif*lmnxiexkfqilvfrldlrni*ikxlq

Frame C:
vgllxnfrkkiyfvkink***lnkivkiiiiiklkrqiikinvll*llflllktyiyffy
*iffffffqkknxknxgxkk---

---*rfkes*sfs**tl*x*nfrfwsfd*i*etfr*kxc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP817 (CHP817Q) /CSM/CH/CHP8-A/CHP817Q.Seq.d/                        204   7e-52
FC-AF06 (FC-AF06Q) /CSM/FC/FC-AF/FC-AF06Q.Seq.d/                      196   2e-49
CFJ144 (CFJ144Q) /CSM/CF/CFJ1-B/CFJ144Q.Seq.d/                        178   4e-44
VHA413 (VHA413Q) /CSM/VH/VHA4-A/VHA413Q.Seq.d/                        123   2e-27
CHF507 (CHF507Q) /CSM/CH/CHF5-A/CHF507Q.Seq.d/                        123   2e-27
AHC702 (AHC702Q) /CSM/AH/AHC7-A/AHC702Q.Seq.d/                        123   2e-27
VHC610 (VHC610Q) /CSM/VH/VHC6-A/VHC610Q.Seq.d/                         72   6e-12
VFC361 (VFC361Q) /CSM/VF/VFC3-C/VFC361Q.Seq.d/                         40   0.023
SHJ647 (SHJ647Q) /CSM/SH/SHJ6-B/SHJ647Q.Seq.d/                         40   0.023
SHE426 (SHE426Q) /CSM/SH/SHE4-B/SHE426Q.Seq.d/                         40   0.023

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ469682|CJ469682.1 Macaca fascicularis mRNA, clone: QnpA-20929, 5' end, expressed inbrain parietal lobe.    42   0.045  2
CN884777|CN884777.1 010815AASB006570HT (AASB) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASB006570, mRNA sequence.    38   0.095  2
DT040596|AC011020_9 putative receptor protein kinase [Arabidopsis, mRNA sequence.    36   0.35   2
CJ463196|CJ463196.1 Macaca fascicularis mRNA, clone: QnpA-11314, 5' end, expressed in brain parietal lobe.    32   0.36   3
AP006209|AP006209.1 Homo sapiens genomic DNA, chromosome 9, clone:RP11-235D9, complete sequence.    40   0.58   4
AC119492|AC119492.5 Rattus norvegicus clone CH230-410L3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   0.63   5
AB020869|AB020869.1 Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium cancer , segment 1/10.    40   0.95   3
AY651025|AY651025.1 Hydra vulgaris c-Jun NH2-terminal kinase mRNA, complete cds.    34   1.3    2
AC162836|AC162836.2 Bos taurus clone CH240-123I9, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    44   1.9    1
CX075784|CX075784.1 UCRCS08_46H11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-46H11-O22-1-5.b, mRNA sequence.    44   1.9    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TA1) RecName: Full=Probable serine/threonine-protein kinase ...    72   6e-12
(Q54H45) RecName: Full=Probable serine/threonine-protein kinase ...    47   2e-04
(Q54H46) RecName: Full=Probable serine/threonine-protein kinase ...    47   2e-04
(Q54Y55) RecName: Full=Dual specificity protein kinase shkC;    ...    44   0.001
AF529239_1(AF529239|pid:none) Cucumis sativus CTR1-like protein ...    42   0.006
AF110519_1(AF110519|pid:none) Lycopersicon esculentum ethylene-i...    42   0.006
AC147431_39(AC147431|pid:none) Medicago truncatula clone mth2-88...    42   0.006
AM446873_3(AM446873|pid:none) Vitis vinifera contig VV79X005170....    42   0.006
AF110518_1(AF110518|pid:none) Lycopersicon esculentum ethylene-i...    42   0.006
AF096250_1(AF096250|pid:none) Lycopersicon esculentum ethylene-r...    42   0.006

 psg: 0.98  gvh: 0.52  alm: 0.20  top: 0.47  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.26  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for CHP817 is mit

>CHP817F.Seq
CTGTTGGCCTACTGGNAAATTTTCGAAAAAAAATCTATTTCGTTAAAATAAATAAATAAT
AATAATTAAATAAAATAGTAAAAATAATAATAATAATAAAATTGAAACGACAAATAATTA
AAATCAATGTACTATTGTAGTTGTTGTTTTTGCTATTAAAAACATATATCTATTTCTTTT
ACTAAATTTTTTTTTTTTTTTTTTTCCAAAAAAAAAATNAAAAAAATNGGGGAANAAAAA
AAAGNNNNNNNNNN

>CHP817Z.Seq
NNNNNNNNNNCATAGAGATTTAAAGAGTCATAATCTTTTAGTTGATGAACNTTATAGAGN
TAAAATTTCAGATTTTGGTCTTTCGACTAGATTTAAGAAACATTTAGATAAAAAGNCTGC
AA

>CHP817P.Seq
CTGTTGGCCTACTGGNAAATTTTCGAAAAAAAATCTATTTCGTTAAAATAAATAAATAAT
AATAATTAAATAAAATAGTAAAAATAATAATAATAATAAAATTGAAACGACAAATAATTA
AAATCAATGTACTATTGTAGTTGTTGTTTTTGCTATTAAAAACATATATCTATTTCTTTT
ACTAAATTTTTTTTTTTTTTTTTTTCCAAAAAAAAAATNAAAAAAATNGGGGAANAAAAA
AAAG----------CATAGAGATTTAAAGAGTCATAATCTTTTAGTTGATGAACNTTATA
GAGNTAAAATTTCAGATTTTGGTCTTTCGACTAGATTTAAGAAACATTTAGATAAAAAGN
CTGCAA