>CHP795 (CHP795Q) /CSM/CH/CHP7-D/CHP795Q.Seq.d/
ACTGTTGGCCTACTGGNACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGA
TACTTCNAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGG
TAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGG
TGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGA
TGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGT
GGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAG
TCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGA
TACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAA
TGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAA
GAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAAC
AAXXXXXXXXXX

LLAYWXNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSG
ESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDAS
HSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKITNWLK
KSDSASVSVTKKEGEVLDVT---

Frame A:
tvgllxqw*fl*l*ylfss*yfx*afm*fsflfcnftnfg*fskm*iycfkhsngyig*w
*kciswptigifsrwnhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*sigirc*
sfkrw*wksinl*lvg*wgrykhsik*sigsk*cnhnnsk*sfviwsnlyfyt*nhklvk
ei**rkcfsnkerg*sfrcn---


Frame B:
LLAYWXNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSG
ESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDAS
HSKGGNGKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKITNWLK
KSDSASVSVTKKEGEVLDVT---


Frame C:
cwptgtmvislvvisllqlilxiglhvvlfsllqlyklwvvlqdvnillqtf*wlhwvvv
kvyqlannwnflkveslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhwy*mlv
iqkvvmekh*pmigrlvgqiqtln*iiywikimqp*qfqmifchlvklillhlksqig*r
nliaqvfq*qrkrvkf*m*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP795 (CHP795Q) /CSM/CH/CHP7-D/CHP795Q.Seq.d/                       1181   0.0
SHB693 (SHB693Q) /CSM/SH/SHB6-D/SHB693Q.Seq.d/                       1152   0.0
SHK244 (SHK244Q) /CSM/SH/SHK2-B/SHK244Q.Seq.d/                       1146   0.0
SHH523 (SHH523Q) /CSM/SH/SHH5-A/SHH523Q.Seq.d/                       1138   0.0
SHF373 (SHF373Q) /CSM/SH/SHF3-D/SHF373Q.Seq.d/                       1138   0.0
CHG850 (CHG850Q) /CSM/CH/CHG8-C/CHG850Q.Seq.d/                       1138   0.0
CHG594 (CHG594Q) /CSM/CH/CHG5-D/CHG594Q.Seq.d/                       1138   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1136   0.0
CHJ174 (CHJ174Q) /CSM/CH/CHJ1-D/CHJ174Q.Seq.d/                       1134   0.0
SHL734 (SHL734Q) /CSM/SH/SHL7-B/SHL734Q.Seq.d/                       1132   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC163646|AC163646.2 Mus musculus BAC clone RP23-207D1 from chromosome 14, complete sequence.    44   2e-04  5
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.19   2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.20   2
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    38   0.41   19
AC112743|AC112743.5 Rattus norvegicus clone CH230-84G22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    32   1.3    8
AC166707|AC166707.5 Medicago truncatula clone mth1-13o17, WORKING DRAFT SEQUENCE, 24 unordered pieces.    32   1.7    8
AC113206|AC113206.10 Mus musculus chromosome 6, clone RP23-320B19, complete sequence.    42   2.1    7
AJ410882|AJ410882.1 Influenza A virus (swine/Ille et Vilaine/1455/99 (H1N1)) partial  N1NA gene for Neuraminidase, genomic RNA.    38   2.6    2
AC167184|AC167184.2 Mus musculus chromosome 5 clone RP23-382F15 map 5, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    34   2.7    6
AJ410881|AJ410881.1 Influenza A virus (swine/Cotes d'Armor/1488/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    38   2.7    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    64   2e-09
CP000790_2199(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    40   0.064
CP000891_2943(CP000891|pid:none) Shewanella baltica OS195, compl...    38   0.19
BA000038_44(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chro...    38   0.19
CP001124_1801(CP001124|pid:none) Geobacter bemidjiensis Bem, com...    38   0.24
CP001390_1131(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    38   0.24
BA000032_55(BA000032|pid:none) Vibrio parahaemolyticus RIMD 2210...    38   0.24
AE014299_1879(AE014299|pid:none) Shewanella oneidensis MR-1, com...    37   0.32
CP000685_4021(CP000685|pid:none) Flavobacterium johnsoniae UW101...    37   0.54
CP000822_2161(CP000822|pid:none) Citrobacter koseri ATCC BAA-895...    36   0.70

 psg: 0.80  gvh: 0.59  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for CHP795 is cyt

>CHP795F.Seq
ACTGTTGGCCTACTGGNACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGA
TACTTCNAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGG
TAGTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGG
TGAAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGA
TGGTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGT
GGTAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAG
TCATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGA
TACAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAA
TGATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAA
GAAATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAAC
AANNNNNNNNNN