AFH263
Library AF
(Link to library)
Clone ID AFH263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16392-1
Original site URL
Representative seq. ID AFH263P
(Link to Original site)
Representative DNA sequence
>AFH263 (AFH263Q) /CSM/AF/AFH2-C/AFH263Q.Seq.d/
AATAATACACATTCTTTCACACCAATCATTTTTTATATAAATTTTTATAAAAACGTTTTT
TAATTTAATTGTTGCGTTTAAACAATGAGGTTAGGATCCATATCATCTCTATCTTGTGAT
CAACTGTGTAAATATTTACATTCATCACTTGGTGATGAATATTCAAACATCATTAATAGT
TTTAAAATAAATCAAGTCACTGGTGATGATTTTGTTTTATTTGAACAAAAAGATTATGAA
ACTTTATCAGTACCTTGGAAATTTCAAAAAAAACTTAAAGAAATACAAGGTTCTGGTGTT
GTAGATAATCCAGGCTCAACTCCAAACCCAAGCCCAAACCCAAGTCCAAACCCAGTACCT
GGCAATACTTCAAATGCACCAACATCAACAGGTAGAGAATCACTTGAGACCCAAAGAGAT
ATCATACAAATGAAAAGTAAAATTGATCTTCTCAGTAATTCATTGTTACAACTAGTTGAG
CAAATGAAAGTTACCAAACCACCTACAAATAACTTTTCAAATTTATCACCAGCAACACAA
AATAAAATATTGAATCCATCACCTCAATCAAAGAGAATCCCAATCATTGATCCAACATGT
GTTGGTGCCAXXXXXXXXXXATTAAAACACCTCTTAGTGAACCTATAGATGGTACTATTG
AATTGATGTATGGTGGTAGAAATATGTTTACTGGCAGTGTTACACAAGGTGATGCTGATC
TTCCTCTAAACCTCTTGGATGGTACATTTGAGGTTATCATTAAACCCAATAAGAGTAATT
TATTACCTTTAAAGTTTAAAATGATTATACATGACTCTGTAAGAACCACTTCAAGCCATC
AAAATGTCGGTAGACCTAAAAAGCCTAAAGAAATGGATTTCGTTTTAGCTTGGGGGGAAT
CACCACTGGATTTGGATTCTCATATGTGGTGTATTCATCCTAATGGTTCTATTAGTCATG
TTTATTTCGGGGGTAGGAGTGTAGATAAAATGTCCTTGGAAGCTGATACTCAAAATGGTT
TTGGTCCCGAAACCATAAGTATTATACGTTTAGATGGTTGTAAATATGTTTATGCAGTTC
ATAATTTCTCAACTGAAGGAGAAATAGCTCAATCAGGTGCCAAGCTTACAATTGCCCATG
AAACCTCAACATTATTTGAAAGATGTATCCCAAACACTCGACAAACTGGTGCAAGATTTT
GGGTAGTATGTACTATTGATGGAACATCTGGAGATATTGACTTCAAAGATCATTTTGAAT
TCCACAATTCACAAACAGATATTCCATTAAAATATAAATAAGTATAAAAAATT
sequence update 2001. 6. 2
Translated Amino Acid sequence
nnthsftpiifyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIINS
FKINQVTGDDFVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPVP
GNTSNAPTSTGRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPATQ
NKILNPSPQSKRIPIIDPTCVGA---

---IKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNLLDGTFEVIIKPNKSNLLPL
KFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDLDSHMWCIHPNGSISHVYFG
GRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFSTEGEIAQSGAKLTIAHETST
LFERCIPNTRQTGARFWVVCTIDGTSGDIDFKDHFEFHNSQTDIPLKYK*v*ki


Translated Amino Acid sequence (All Frames)
Frame A:
nnthsftpiifyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIINS
FKINQVTGDDFVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPVP
GNTSNAPTSTGRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPATQ
NKILNPSPQSKRIPIIDPTCVGA---

---IKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNLLDGTFEVIIKPNKSNLLPL
KFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDLDSHMWCIHPNGSISHVYFG
GRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFSTEGEIAQSGAKLTIAHETST
LFERCIPNTRQTGARFWVVCTIDGTSGDIDFKDHFEFHNSQTDIPLKYK*v*ki

Frame B:
iihilshqsffi*ifiktffnlivafkq*g*dpyhlylvincvniyihhlvmniqtsliv
lk*ikslvmilfylnkkimklyqylgnfkknlkkykvlvl*iiqaqlqtqaqtqvqtqyl
ailqmhqhqqvenhlrpkeisyk*kvklifsvihcyn*lsk*klpnhlqitfqiyhqqhk
iky*ihhlnqresqsliqhvlvp---

---lkhllvnl*mvlln*cmvveicllavlhkvmlifl*tswmvhlrlslnpirviyyl*
slk*lymtl*eplqaikmsvdlkslkkwisf*lggnhhwiwilicgvfilmvllvmfisg
vgv*ikcpwklilkmvlvpkp*vlyv*mvvnmfmqfiisqlkek*lnqvpslqlpmkpqh
ylkdvsqtldklvqdfg*yvllmehleiltskiilnstihkqifh*ninkykk

Frame C:
*ytffhtnhflykfl*krfli*llrlnnevrihiisil*stv*iftfitw**ifkhh**f
*nksshw**fcfi*tkrl*nfistleiskkt*rntrfwccr*srlnskpkpkpkskpstw
qyfkctninr*rit*dpkryhtnek*n*ssq*fivtts*anesyqttyk*lfkfitsntk
*niesitsikenpnh*snmcwc---

---*nts**tyrwyy*idvww*kyvywqcytr*c*ssskplgwyi*gyh*tq*e*fitfk
v*ndyt*lcknhfkpskcr*t*ka*rngfrfslggittgfgfsyvvyss*wfy*sclfrg
*ecr*nvlgs*yskwfwsrnhkyytfrwl*iclcss*fln*rrnssircqayncp*nlni
i*kmypkhstnwckilgsmyy*wniwry*lqrsf*ipqftnrysiki*isikn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFH263 (AFH263Q) /CSM/AF/AFH2-C/AFH263Q.Seq.d/ 2375 0.0
SFF683 (SFF683Q) /CSM/SF/SFF6-D/SFF683Q.Seq.d/ 1374 0.0
SFE535 (SFE535Q) /CSM/SF/SFE5-B/SFE535Q.Seq.d/ 1374 0.0
AFM772 (AFM772Q) /CSM/AF/AFM7-C/AFM772Q.Seq.d/ 1374 0.0
AFK644 (AFK644Q) /CSM/AF/AFK6-B/AFK644Q.Seq.d/ 1374 0.0
AFE181 (AFE181Q) /CSM/AF/AFE1-D/AFE181Q.Seq.d/ 1374 0.0
AFG278 (AFG278Q) /CSM/AF/AFG2-D/AFG278Q.Seq.d/ 1370 0.0
AFH767 (AFH767Q) /CSM/AF/AFH7-C/AFH767Q.Seq.d/ 1368 0.0
AFN232 (AFN232Q) /CSM/AF/AFN2-B/AFN232Q.Seq.d/ 1360 0.0
AFH337 (AFH337Q) /CSM/AF/AFH3-B/AFH337Q.Seq.d/ 1358 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 34 2e-04 17
AC135693|AC135693.2 Rattus norvegicus clone CH230-244M15, WORKING DRAFT SEQUENCE, 11 unordered pieces. 58 3e-04 1
AC103457|AC103457.6 Rattus norvegicus clone CH230-42P7, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 58 3e-04 1
AC102995|AC102995.7 Rattus norvegicus clone CH230-67N20, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 58 3e-04 1
AC008319|AC008319.4 Drosophila melanogaster, chromosome 2L, region 21E-22A, BAC clone BACR38A03, complete sequence. 56 0.001 1
AE003586|AE003586.3 Drosophila melanogaster chromosome 2L section 5 of 83 of the complete sequence. 56 0.001 1
AC005421|AC005421.1 Drosophila melanogaster, chromosome 2L, region 22A1-22A1, P1 clone DS03601, complete sequence. 56 0.001 1
AC017558|AC017558.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 56 0.001 1
AF241642|AF241642.1 Planococcus lilacinus telomere repeat-associated interstitial sequence 4. 42 0.002 2
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 36 0.008 11
dna update 2004. 4. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000478_3794(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 70 2e-10
CP000112_1873(CP000112|pid:none) Desulfovibrio desulfuricans G20... 67 1e-09
CP000880_2513(CP000880|pid:none) Salmonella enterica subsp. ariz... 67 1e-09
AE014075_780(AE014075|pid:none) Escherichia coli CFT073, complet... 62 3e-08
CU928162_679(CU928162|pid:none) Escherichia coli ED1a chromosome... 62 4e-08
CP000247_733(CP000247|pid:none) Escherichia coli 536, complete g... 61 1e-07
CP000243_708(CP000243|pid:none) Escherichia coli UTI89, complete... 60 2e-07
AE001437_1067(AE001437|pid:none) Clostridium acetobutylicum ATCC... 57 1e-06
FM954973_832(FM954973|pid:none) Vibrio splendidus LGP32 chromoso... 56 2e-06
AE001437_1068(AE001437|pid:none) Clostridium acetobutylicum ATCC... 55 5e-06
protein update 2009. 4.21
PSORT

psg: 0.88 gvh: 0.44 alm: 0.46 top: 0.30 tms: 0.00 mit: 0.28 mip: 0.02
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for AFH263 is nuc

5' end seq. ID AFH263F
5' end seq.
>AFH263F.Seq
AATAATACACATTCTTTCACACCAATCATTTTTTATATAAATTTTTATAAAAACGTTTTT
TAATTTAATTGTTGCGTTTAAACAATGAGGTTAGGATCCATATCATCTCTATCTTGTGAT
CAACTGTGTAAATATTTACATTCATCACTTGGTGATGAATATTCAAACATCATTAATAGT
TTTAAAATAAATCAAGTCACTGGTGATGATTTTGTTTTATTTGAACAAAAAGATTATGAA
ACTTTATCAGTACCTTGGAAATTTCAAAAAAAACTTAAAGAAATACAAGGTTCTGGTGTT
GTAGATAATCCAGGCTCAACTCCAAACCCAAGCCCAAACCCAAGTCCAAACCCAGTACCT
GGCAATACTTCAAATGCACCAACATCAACAGGTAGAGAATCACTTGAGACCCAAAGAGAT
ATCATACAAATGAAAAGTAAAATTGATCTTCTCAGTAATTCATTGTTACAACTAGTTGAG
CAAATGAAAGTTACCAAACCACCTACAAATAACTTTTCAAATTTATCACCAGCAACACAA
AATAAAATATTGAATCCATCACCTCAATCAAAGAGAATCCCAATCATTGATCCAACATGT
GTTGGTGCCA----------
Length of 5' end seq. 610
3' end seq. ID AFH263Z
3' end seq.
>AFH263Z.Seq
----------ATTAAAACACCTCTTAGTGAACCTATAGATGGTACTATTGAATTGATGTA
TGGTGGTAGAAATATGTTTACTGGCAGTGTTACACAAGGTGATGCTGATCTTCCTCTAAA
CCTCTTGGATGGTACATTTGAGGTTATCATTAAACCCAATAAGAGTAATTTATTACCTTT
AAAGTTTAAAATGATTATACATGACTCTGTAAGAACCACTTCAAGCCATCAAAATGTCGG
TAGACCTAAAAAGCCTAAAGAAATGGATTTCGTTTTAGCTTGGGGGGAATCACCACTGGA
TTTGGATTCTCATATGTGGTGTATTCATCCTAATGGTTCTATTAGTCATGTTTATTTCGG
GGGTAGGAGTGTAGATAAAATGTCCTTGGAAGCTGATACTCAAAATGGTTTTGGTCCCGA
AACCATAAGTATTATACGTTTAGATGGTTGTAAATATGTTTATGCAGTTCATAATTTCTC
AACTGAAGGAGAAATAGCTCAATCAGGTGCCAAGCTTACAATTGCCCATGAAACCTCAAC
ATTATTTGAAAGATGTATCCCAAACACTCGACAAACTGGTGCAAGATTTTGGGTAGTATG
TACTATTGATGGAACATCTGGAGATATTGACTTCAAAGATCATTTTGAATTCCACAATTC
ACAAACAGATATTCCATTAAAATATAAATAAGTATAAAAAATT
Length of 3' end seq. 693
Connected seq. ID AFH263P
Connected seq.
>AFH263P.Seq
AATAATACACATTCTTTCACACCAATCATTTTTTATATAAATTTTTATAAAAACGTTTTT
TAATTTAATTGTTGCGTTTAAACAATGAGGTTAGGATCCATATCATCTCTATCTTGTGAT
CAACTGTGTAAATATTTACATTCATCACTTGGTGATGAATATTCAAACATCATTAATAGT
TTTAAAATAAATCAAGTCACTGGTGATGATTTTGTTTTATTTGAACAAAAAGATTATGAA
ACTTTATCAGTACCTTGGAAATTTCAAAAAAAACTTAAAGAAATACAAGGTTCTGGTGTT
GTAGATAATCCAGGCTCAACTCCAAACCCAAGCCCAAACCCAAGTCCAAACCCAGTACCT
GGCAATACTTCAAATGCACCAACATCAACAGGTAGAGAATCACTTGAGACCCAAAGAGAT
ATCATACAAATGAAAAGTAAAATTGATCTTCTCAGTAATTCATTGTTACAACTAGTTGAG
CAAATGAAAGTTACCAAACCACCTACAAATAACTTTTCAAATTTATCACCAGCAACACAA
AATAAAATATTGAATCCATCACCTCAATCAAAGAGAATCCCAATCATTGATCCAACATGT
GTTGGTGCCA----------ATTAAAACACCTCTTAGTGAACCTATAGATGGTACTATTG
AATTGATGTATGGTGGTAGAAATATGTTTACTGGCAGTGTTACACAAGGTGATGCTGATC
TTCCTCTAAACCTCTTGGATGGTACATTTGAGGTTATCATTAAACCCAATAAGAGTAATT
TATTACCTTTAAAGTTTAAAATGATTATACATGACTCTGTAAGAACCACTTCAAGCCATC
AAAATGTCGGTAGACCTAAAAAGCCTAAAGAAATGGATTTCGTTTTAGCTTGGGGGGAAT
CACCACTGGATTTGGATTCTCATATGTGGTGTATTCATCCTAATGGTTCTATTAGTCATG
TTTATTTCGGGGGTAGGAGTGTAGATAAAATGTCCTTGGAAGCTGATACTCAAAATGGTT
TTGGTCCCGAAACCATAAGTATTATACGTTTAGATGGTTGTAAATATGTTTATGCAGTTC
ATAATTTCTCAACTGAAGGAGAAATAGCTCAATCAGGTGCCAAGCTTACAATTGCCCATG
AAACCTCAACATTATTTGAAAGATGTATCCCAAACACTCGACAAACTGGTGCAAGATTTT
GGGTAGTATGTACTATTGATGGAACATCTGGAGATATTGACTTCAAAGATCATTTTGAAT
TCCACAATTCACAAACAGATATTCCATTAAAATATAAATAAGTATAAAAAATT
Length of connected seq. 1303
Full length Seq ID -
Full length Seq. -
Length of full length seq. -