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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP756
Library CH
(Link to library)
Clone ID CHP756
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHP756P
(Link to Original site)
Representative DNA sequence 
>CHP756 (CHP756Q) /CSM/CH/CHP7-C/CHP756Q.Seq.d/
GTAAATGGTAATGTTATTTCATCAATTACTACCGATGCTAATGGTAGATATGCATTTGAA
AATGTTGCCAATGGTGTTTATTGTTTATGGATGGAAGGTACAAAATATTTCAATCCAGGT
TGCGTTGGTAGAATTGAAATCAACTCTGCAACAATGCCAAAATCAGTTGCATCAGATGGT
GTTCAATCACCAACCATTTTAAGAGCTGGTTCATTTAGTCTTTTCCTTACTGGTAATTCT
GGATATGGTGGTTATGCATACAATGACATAGACCTCAATGGATATTTGAGTAGTAGAGAT
CAAGGTATCGCTGGTATTATTGTCAAGATTTACCTACCAGTTTATAATTTCCTCTTTGGA
ACCGTTACAACCGATTCAAATGGTAGATGGTCATTCAGTGGTTTACAACCAGGTTTCCCA
GTTAGAATTGAGTTTGTAATTCCAAATGATTTCACTTCAACTGGTGCAAATTTGGTAAAT
XXXXXXXXXXTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTA
TTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATG
CAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTA
CCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATT
CTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTC
AAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAAT
CAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATT
TCAGTTCAAATTATTATTGTGTAATTNCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATT
ACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACT
GTTGATAATGTTTATGTCACTTNCTTTTACTNCTNCTGATGCTGGTGGTTATTATTTTAA
TGGTTGTTNCATTGGTATTATNCCAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
VNGNVISSITTDANGRYAFENVANGVYCLWMEGTKYFNPGCVGRIEINSATMPKSVASDG
VQSPTILRAGSFSLFLTGNSGYGGYAYNDIDLNGYLSSRDQGIAGIIVKIYLPVYNFLFG
TVTTDSNGRWSFSGLQPGFPVRIEFVIPNDFTSTGANLVN---

---HDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRT
PSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQS
TPTSQTVSDSNGYFKFEVDFSSNYYCVIXCCILPSWFFHYNEKC*snsskyk**cflinc
**clchxlllllmlvviilmvvxlvlxqk
Translated Amino Acid sequence (All Frames) 
Frame A:
VNGNVISSITTDANGRYAFENVANGVYCLWMEGTKYFNPGCVGRIEINSATMPKSVASDG
VQSPTILRAGSFSLFLTGNSGYGGYAYNDIDLNGYLSSRDQGIAGIIVKIYLPVYNFLFG
TVTTDSNGRWSFSGLQPGFPVRIEFVIPNDFTSTGANLVN---

---s*lyqcfwcn*rws*yycynwfrll*si*rfnslv*cnlw*ttkrllfiynlfkwsy
pisnlw*tkwsw*yyfsv*ffsstiscw*sla*ykw*wysrcw*twyfrnhsilnlwsti
nsnksncirfkwlfqi*s*fqfklllcnxllhssklvlplq*emliqliqiqivmlsyql
limfmslxftxxdaggyyfngcxigixpkk

Frame B:
*mvmlfhqllpmlmvdmhlkmlpmvfivygwkvqnisiqvalvelkstlqqcqnqlhqmv
fnhqpf*elvhlvfsllvildmvvmhtmt*tsmdi*vveikvslvllsrftyqfiissle
plqpiqmvdghsvvynqvsqlelsl*fqmislqlvqiw*---

---HDYTNAFGATKGGRDIIVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRT
PSPTFGKQNGLGDITSVYDSSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQS
TPTSQTVSDSNGYFKFEVDFSSNYYCVIXCCILPSWFFHYNEKC*snsskyk**cflinc
**clchxlllllmlvviilmvvxlvlxqk

Frame C:
kw*cyfinyyrc*w*ici*kccqwcllfmdgrykifqsrlrw*n*nqlcnnakiscirwc
sitnhfkswfi*sfpyw*fwiwwlciq*hrpqwife**rsryrwyycqdlptsl*fplwn
rynrfkw*mviqwfttrfps*n*vcnsk*fhfnwckfgk---

---mtipmllvqlkvvvilllqlvsitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvp
hlqplvnkmvlvillqcmillfhnivlvefgli*mvmvfkmlvnlvfqesqys*smvnnq
lqqvklypiqmvisnlklisvqiiiv*xpvaffqagssitmrnadpthpntnsdaflstv
dnvyvtxfyxx*cwwllf*wlxhwyyxkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP756 (CHP756Q) /CSM/CH/CHP7-C/CHP756Q.Seq.d/                       2093   0.0
CHP105 (CHP105Q) /CSM/CH/CHP1-A/CHP105Q.Seq.d/                       1181   0.0
CHP419 (CHP419Q) /CSM/CH/CHP4-A/CHP419Q.Seq.d/                       1172   0.0
SHL873 (SHL873Q) /CSM/SH/SHL8-D/SHL873Q.Seq.d/                       1152   0.0
SHL749 (SHL749Q) /CSM/SH/SHL7-C/SHL749Q.Seq.d/                       1152   0.0
SHL724 (SHL724Q) /CSM/SH/SHL7-A/SHL724Q.Seq.d/                       1152   0.0
SHL693 (SHL693Q) /CSM/SH/SHL6-D/SHL693Q.Seq.d/                       1152   0.0
SHL487 (SHL487Q) /CSM/SH/SHL4-D/SHL487Q.Seq.d/                       1152   0.0
SHL441 (SHL441Q) /CSM/SH/SHL4-B/SHL441Q.Seq.d/                       1152   0.0
SHL440 (SHL440Q) /CSM/SH/SHL4-B/SHL440Q.Seq.d/                       1152   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL353718|AL353718.10 Human DNA sequence from clone RP11-472F14 on chromosome 9 Cotains  the 3' end of the gene for ubiquitin-like, containing PHD and RING  finger domains 2 (URF2), a novel gene (PROO365), the 3' end of the  GLDC gene for glycine dehydrogenase (decarboxylating; glycine decarboxylase, glycine cleavage system protein P) and a pseudogene  similar to part of RP42 homolog.    40   0.28   8
BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.38   1
AC156216|AC156216.2 Bos taurus clone CH240-43E7, *** SEQUENCING IN PROGRESS ***, 53 unordered pieces.    38   0.52   5
AC069411|AC069411.21 Homo sapiens 3 BAC RP11-609K13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42   0.62   4
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    36   0.78   2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    36   0.79   2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   0.79   2
AW122174|AW122174.1 UI-M-BH2.2-aor-h-05-0-UI.s1 NIH_BMAP_M_S3.2 Mus musculus cDNA clone UI-M-BH2.2-aor-h-05-0-UI 3', mRNA sequence.    36   0.97   2
AC104165|AC104165.2 Homo sapiens chromosome 3 clone RP11-681O4, complete sequence.    36   1.4    6
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   1.5    1
dna update 2005.10.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei...    68   5e-10
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    68   6e-10
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    68   6e-10
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    68   6e-10
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    68   6e-10
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    68   6e-10
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    68   6e-10
(Q8NXX6) RecName: Full=Serine-aspartate repeat-containing protei...    68   6e-10
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD...    66   2e-09
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    62   3e-08
protein update 2009. 4.11
PSORT 

 psg: 0.83  gvh: 0.40  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHP756 is cyt
5' end seq. ID CHP756F
5' end seq. 
>CHP756F.Seq
GTAAATGGTAATGTTATTTCATCAATTACTACCGATGCTAATGGTAGATATGCATTTGAA
AATGTTGCCAATGGTGTTTATTGTTTATGGATGGAAGGTACAAAATATTTCAATCCAGGT
TGCGTTGGTAGAATTGAAATCAACTCTGCAACAATGCCAAAATCAGTTGCATCAGATGGT
GTTCAATCACCAACCATTTTAAGAGCTGGTTCATTTAGTCTTTTCCTTACTGGTAATTCT
GGATATGGTGGTTATGCATACAATGACATAGACCTCAATGGATATTTGAGTAGTAGAGAT
CAAGGTATCGCTGGTATTATTGTCAAGATTTACCTACCAGTTTATAATTTCCTCTTTGGA
ACCGTTACAACCGATTCAAATGGTAGATGGTCATTCAGTGGTTTACAACCAGGTTTCCCA
GTTAGAATTGAGTTTGTAATTCCAAATGATTTCACTTCAACTGGTGCAAATTTGGTAAAT
NNNNNNNNNN
Length of 5' end seq. 490
3' end seq. ID CHP756Z
3' end seq. 
>CHP756Z.Seq
NNNNNNNNNNTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTA
TTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATG
CAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTA
CCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATT
CTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTC
AAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAAT
CAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATT
TCAGTTCAAATTATTATTGTGTAATTNCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATT
ACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACT
GTTGATAATGTTTATGTCACTTNCTTTTACTNCTNCTGATGCTGGTGGTTATTATTTTAA
TGGTTGTTNCATTGGTATTATNCCAAAAAAA
Length of 3' end seq. 631
Connected seq. ID CHP756P
Connected seq. 
>CHP756P.Seq
GTAAATGGTAATGTTATTTCATCAATTACTACCGATGCTAATGGTAGATATGCATTTGAA
AATGTTGCCAATGGTGTTTATTGTTTATGGATGGAAGGTACAAAATATTTCAATCCAGGT
TGCGTTGGTAGAATTGAAATCAACTCTGCAACAATGCCAAAATCAGTTGCATCAGATGGT
GTTCAATCACCAACCATTTTAAGAGCTGGTTCATTTAGTCTTTTCCTTACTGGTAATTCT
GGATATGGTGGTTATGCATACAATGACATAGACCTCAATGGATATTTGAGTAGTAGAGAT
CAAGGTATCGCTGGTATTATTGTCAAGATTTACCTACCAGTTTATAATTTCCTCTTTGGA
ACCGTTACAACCGATTCAAATGGTAGATGGTCATTCAGTGGTTTACAACCAGGTTTCCCA
GTTAGAATTGAGTTTGTAATTCCAAATGATTTCACTTCAACTGGTGCAAATTTGGTAAAT
----------TCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTA
TTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATG
CAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTA
CCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATT
CTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTC
AAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAAT
CAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATT
TCAGTTCAAATTATTATTGTGTAATTNCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATT
ACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACT
GTTGATAATGTTTATGTCACTTNCTTTTACTNCTNCTGATGCTGGTGGTTATTATTTTAA
TGGTTGTTNCATTGGTATTATNCCAAAAAAA
Length of connected seq. 1101
Full length Seq ID -
Full length Seq. -
Length of full length seq. -