CHP738
Library CH
(Link to library)
Clone ID CHP738
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16256-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHP738 (CHP738Q) /CSM/CH/CHP7-B/CHP738Q.Seq.d/
XXXXXXXXXXCTAACAATGGTAATTGTTTCATCCAAAAACCAACCNCCAGAAATGTGATA
AAAGGTGAATGTTTGTATGGGTTTATTNCTTGTGANACTGAAAAAAAGGTTGTGTTGAAA
CTCCCACGTGTTTTGTCCATNCCAAAGGGTAAATGTCCAAGTTGGTAAATGTGTTCCAGG
TGTTGGGTTGTAAAATATGAAACCACGTGTTTGTAAAAGCTGAATGCTTTTCTGTTTAGT
TGCTGAAATGTGAATGAAATAGTTGGGTTGTATTNCNAATTTGAAAANAAAATGTGCTGC
TGAATAAATGGGTAGATGTCAAGCTGGTATTTGTAAGAAATGCAACTGCAACTGAANAAA
GGGTACTTGTGAGTTCTGTTGATTTCGGATCCCAAAACCATATCATTTGTAAAACTGCTG
NCTGTTGTTTNCAGTTGGTGTTGCTGTTGGTGTTGCTGTTGGTGGTGCAATTGCACTTGG
TGTTCTTTATTTTTGCTGGTGAAGAAAAGGTTATGNACTACTGGNAAAGCAAGTTCAAGG
sequence update 2002. 9.10
Translated Amino Acid sequence
---*qw*lfhpktnxqkcdkr*mfvwvyxl*x*kkgcvetptcfvhxkg*msklvnvfqv
lgcki*nhvfvkaecfsv*llkce*nswvvxxi*KXNVLLNKWVDVKLVFVRNATATEXR
VLVSSVDFGSQNHIICKTAXCCXQLVLLLVLLLVVQLHLVFFIFAGEEKVMXYWXSKFK


Translated Amino Acid sequence (All Frames)
Frame A:
---*qw*lfhpktnxqkcdkr*mfvwvyxl*x*kkgcvetptcfvhxkg*msklvnvfqv
lgcki*nhvfvkaecfsv*llkce*nswvvxxi*KXNVLLNKWVDVKLVFVRNATATEXR
VLVSSVDFGSQNHIICKTAXCCXQLVLLLVLLLVVQLHLVFFIFAGEEKVMXYWXSKFK


Frame B:
---nngncfiqkptxrnvikgeclygfixcxtekkvvlklprvlsxpkgkcpsw*mcsrc
wvvkyettcl*klnaflfsc*nvneivglyxxfexkmcc*ing*msswyl*emqlqlxkg
yl*vllisdpktisfvkllxvvxswcccwcccwwcnctwcslfllvkkrlxttgkassr


Frame C:
---tmvivssknqppem**kvnvcmglxlvxlkkrlc*nshvfcpxqrvnvqvgkcvpgv
gl*nmkprvcks*mlfclvaem*mk*lgcixnlkxkcaae*mgrcqagickkcncn*xkg
tcefc*fripkpyhl*ncxllfxvgvavgvavggaialgvlyfcw*rkgyxllxkqvq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP738 (CHP738Q) /CSM/CH/CHP7-B/CHP738Q.Seq.d/ 938 0.0
SSM566 (SSM566Q) /CSM/SS/SSM5-C/SSM566Q.Seq.d/ 311 6e-84
SSK891 (SSK891Q) /CSM/SS/SSK8-D/SSK891Q.Seq.d/ 311 6e-84
SSI690 (SSI690Q) /CSM/SS/SSI6-D/SSI690Q.Seq.d/ 311 6e-84
SLE370 (SLE370Q) /CSM/SL/SLE3-C/SLE370Q.Seq.d/ 311 6e-84
SLE336 (SLE336Q) /CSM/SL/SLE3-B/SLE336Q.Seq.d/ 311 6e-84
SHC274 (SHC274Q) /CSM/SH/SHC2-D/SHC274Q.Seq.d/ 311 6e-84
CHP226 (CHP226Q) /CSM/CH/CHP2-B/CHP226Q.Seq.d/ 311 6e-84
CHM354 (CHM354Q) /CSM/CH/CHM3-C/CHM354Q.Seq.d/ 311 6e-84
AHQ194 (AHQ194Q) /CSM/AH/AHQ1-D/AHQ194Q.Seq.d/ 311 6e-84

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

G65023|G65023.1 DH0304 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideumSTS genomic 5', sequence tagged site. 58 5e-46 9
DQ121048|DQ121048.1 Hucho taimen clone ZA-43 microsatellite sequence. 62 1e-05 1
BX842624|BX842624.1 Neurospora crassa DNA linkage group I BAC clone B10D6. 62 1e-05 1
AY221114|AY221114.1 Acetivibrio cellulolyticus cellulosomal bifunctional enzyme-binding/scaffoldin-anchoring protein D (scaD) gene, complete cds. 62 1e-05 2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 54 3e-05 4
AE003443|AE003443.2 Drosophila melanogaster chromosome X, section 27 of 74 of the complete sequence. 60 5e-05 1
AC013022|AC013022.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 60 5e-05 1
AC104609|AC104609.10 Drosophila melanogaster X BAC RP98-39F18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 60 5e-05 1
AF414117|AF414117.1 Drosophila melanogaster stardust protein MAGUK1 isoform (sdt) mRNA, complete cds, alternatively spliced. 60 5e-05 1
BH109584|BH109584.1 RPCI-24-246L17.TV RPCI-24 Mus musculus genomic clone RPCI-24-246L17 , DNA sequence. 60 5e-05 1
dna update 2005.10.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 42 0.010
CP000250_3485(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 33 5.8
AK127601_1(AK127601|pid:none) Homo sapiens cDNA FLJ45698 fis, cl... 33 5.8
CP000817_134(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 33 5.8
(Q08651) RecName: Full=Uncharacterized oxidoreductase YOR246C; ... 33 5.9

protein update 2009. 1. 3
PSORT

psg: 0.63 gvh: 0.50 alm: 0.13 top: 0.47 tms: 0.07 mit: 0.26 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.10 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for CHP738 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHP738Z
3' end seq.
>CHP738Z.Seq
NNNNNNNNNNCTAACAATGGTAATTGTTTCATCCAAAAACCAACCNCCAGAAATGTGATA
AAAGGTGAATGTTTGTATGGGTTTATTNCTTGTGANACTGAAAAAAAGGTTGTGTTGAAA
CTCCCACGTGTTTTGTCCATNCCAAAGGGTAAATGTCCAAGTTGGTAAATGTGTTCCAGG
TGTTGGGTTGTAAAATATGAAACCACGTGTTTGTAAAAGCTGAATGCTTTTCTGTTTAGT
TGCTGAAATGTGAATGAAATAGTTGGGTTGTATTNCNAATTTGAAAANAAAATGTGCTGC
TGAATAAATGGGTAGATGTCAAGCTGGTATTTGTAAGAAATGCAACTGCAACTGAANAAA
GGGTACTTGTGAGTTCTGTTGATTTCGGATCCCAAAACCATATCATTTGTAAAACTGCTG
NCTGTTGTTTNCAGTTGGTGTTGCTGTTGGTGTTGCTGTTGGTGGTGCAATTGCACTTGG
TGTTCTTTATTTTTGCTGGTGAAGAAAAGGTTATGNACTACTGGNAAAGCAAGTTCAAGG
Length of 3' end seq. 540
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -