NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP736
Library CH
(Link to library)
Clone ID CHP736
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16256-1
Original site URL
Representative seq. ID CHP736P
(Link to Original site)
Representative DNA sequence 
>CHP736 (CHP736Q) /CSM/CH/CHP7-B/CHP736Q.Seq.d/
ACTGTTGGCCTACTGGNAATCATTTAAATAATAAAAATAATAATTAATAATAATAAAAAT
AATAATAACAAATTGAAATTAATAAATCACACCAAAAAAACGTACACACACAAAAATAAT
AATAAAATGAAAAAGACTTTCATATTTTTATACTGTGTGGTTCTTTTTATTTCTACCACT
CTAGCAGTTGAAATGAAAAAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCA
AAATATAATAACAATTTTGAACCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCA
ATTCTAAATGAAACCACTGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTC
AATAAACAAGGTCGTATTTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCT
GATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATG
AATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGA
AGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAAAT
CCAAAACCATATCATAATTATCACTTCTGTGXXXXXXXXXXGTTTGTCCATCCAAAGGTA
AATGTCAAGTTGGTAAATGTGTTCCAGGNGTTGGTTGTAAATATNAACCNCGNGTTTGTA
AAGCTGATGCTTTNTGTTTAGNTGCTGAANGTGATGAAANAGTTGGTTGTATTCAATTTG
AAAANAAATGNGCTGCTGATAATGGTANANGTCAAGCTGGTATTTGTAANAATGCNACTG
CAACTGAANAAGGNACTTGNGAGTNTGTTGATTTCGATCCAAAACCNTTCATTTGTAAAA
CTGCTGCTGTTGTTTCAGTTGGNGTTGCTGTTGGTGTTGCTGTTGGTGGNGCNATTGCNC
TTGGNGTNTTTATTTTTGNTGGTAANAAAGGTTATGACTACTGGAAAGCAAGTCAAGGTG
TTACAANGGCCNCATCAAANGCCNATCCCCTTTATGAAAGCNATCCNTCAGGTGGTGAAA
ATCCNATTTANACTAGCCCCNATTAGCAGTNATNACTTTTNAAAATCCATAAAAACCCCC
NACTCAAACCCCC
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxii*IIKIIINNNKNNNNKLKLINHTKKTYTHKNNNKMKKTFIFLYCVVLFISTT
LAVEMKKTQDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTV
NKQGRIYSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDG
RGFDVDQQFRNYYDDESKANPKPYHNYHFC---

---VCPSKGKCQVGKCVPGVGCKYXPRVCKADAXCLXAEXDEXVGCIQFEXKXAADNGXX
QAGICXNATATEXGTXEXVDFDPKPFICKTAAVVSVGVAVGVAVGGAIALGVFIFXGXKG
YDYWKASQGVTXAXSXAXPLYESXPSGGENPIXTSPX*qxxlxkihknpxlkp
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxii*IIKIIINNNKNNNNKLKLINHTKKTYTHKNNNKMKKTFIFLYCVVLFISTT
LAVEMKKTQDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTV
NKQGRIYSPELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDG
RGFDVDQQFRNYYDDESKANPKPYHNYHFC---

---VCPSKGKCQVGKCVPGVGCKYXPRVCKADAXCLXAEXDEXVGCIQFEXKXAADNGXX
QAGICXNATATEXGTXEXVDFDPKPFICKTAAVVSVGVAVGVAVGGAIALGVFIFXGXKG
YDYWKASQGVTXAXSXAXPLYESXPSGGENPIXTSPX*qxxlxkihknpxlkp

Frame B:
llaywxsfk**k**liiikiiitn*n**itpkkrthtkiiik*krlsyfytvwfflflpl
*qlk*kklkili*efsiniqniitilnlkmvf*q*il*nqf*mkplvfqs*pqcqilqls
inkvvfihqnylntfsliilmlqietivvkiih*illlq*i*minqiifmiiknfsqlme
edlm*innsvtimmmkvkqiqnhiiiitsv---

---fvhpkvnvklvnvfqxlvvnxnxxfvklmlxv*xlxvmkxlvvfnlkxnxllimvxv
klvfvxmxlqlxkxlxsxlisiqnxsfvkllllfqlxlllvlllvxxlxlxxlflxvxkv
mttgkqvkvlqxphqxpipfmkaixqvvkixfxlapissxxfxksiktpxsnp

Frame C:
cwptgnhlnnknnn****k***qieinkshqknvhtqk***nekdfhifilcgsfyfyhs
ss*neknsrf*fknfrstski**qf*t*kwcfnsksckinsk*nhwysrvnhnvksyncq
*trsylftrii*ilfr**f*csr*kq*w*klsiryysynefr**iklfl**srifpn*wk
ri*crstip*ll***k*sksktis*lsll---

---lsiqr*mssw*mcsrxwl*ixtxxl*s*cfxfxc*x**xswlysi*kxmxc**wxxs
swyl*xcxcn*xrxlxvc*frsktxhl*nccccfswxccwcccwwxxcxwxxyfxw*xrl
*llesksrcyxgxikxxspl*kxsxrw*ksxlx*pxlavxtfxnp*kpptqtp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ448 (SHJ448Q) /CSM/SH/SHJ4-B/SHJ448Q.Seq.d/                        955   0.0
SHJ195 (SHJ195Q) /CSM/SH/SHJ1-D/SHJ195Q.Seq.d/                        955   0.0
SHI807 (SHI807Q) /CSM/SH/SHI8-A/SHI807Q.Seq.d/                        955   0.0
SHH122 (SHH122Q) /CSM/SH/SHH1-A/SHH122Q.Seq.d/                        955   0.0
SHG866 (SHG866Q) /CSM/SH/SHG8-C/SHG866Q.Seq.d/                        955   0.0
SHG676 (SHG676Q) /CSM/SH/SHG6-D/SHG676Q.Seq.d/                        955   0.0
SHG208 (SHG208Q) /CSM/SH/SHG2-A/SHG208Q.Seq.d/                        955   0.0
SHF415 (SHF415Q) /CSM/SH/SHF4-A/SHF415Q.Seq.d/                        955   0.0
SHF223 (SHF223Q) /CSM/SH/SHF2-A/SHF223Q.Seq.d/                        955   0.0
SHE474 (SHE474Q) /CSM/SH/SHE4-D/SHE474Q.Seq.d/                        955   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

G65023|G65023.1 DH0304 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideumSTS genomic 5', sequence tagged site.   327   3e-85  1
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.    52   9e-17  4
AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds.    38   2e-12  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    46   6e-07  15
BX842624|BX842624.1 Neurospora crassa DNA linkage group I BAC clone B10D6.    58   4e-04  1
AC112373|AC112373.4 Rattus norvegicus clone CH230-242I7, *** SEQUENCING IN PROGRESS ***, 119 unordered pieces.    56   0.002  1
AC007814|AC007814.6 Drosophila melanogaster, chromosome 3R, region 91D-91E, BAC clone BACR44N12, complete sequence.    56   0.002  1
AC017841|AC017841.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    56   0.002  1
CQ613400|CQ613400.1 Sequence 41158 from Patent WO0171042.          56   0.002  1
AY221114|AY221114.1 Acetivibrio cellulolyticus cellulosomal bifunctional enzyme-binding/scaffoldin-anchoring protein D (scaD) gene, complete cds.    56   0.002  1
dna update 2005.10.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   150   1e-34
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   138   4e-31
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                135   3e-30
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   122   3e-26
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                115   3e-24
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   109   2e-22
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                109   2e-22
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor;                108   4e-22
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 78   6e-13
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 74   1e-11
protein update 2009. 4.11
PSORT 

 psg: 0.43  gvh: 0.70  alm: 0.21  top: 0.10  tms: 0.13  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for CHP736 is end
5' end seq. ID CHP736F
5' end seq. 
>CHP736F.Seq
ACTGTTGGCCTACTGGNAATCATTTAAATAATAAAAATAATAATTAATAATAATAAAAAT
AATAATAACAAATTGAAATTAATAAATCACACCAAAAAAACGTACACACACAAAAATAAT
AATAAAATGAAAAAGACTTTCATATTTTTATACTGTGTGGTTCTTTTTATTTCTACCACT
CTAGCAGTTGAAATGAAAAAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCA
AAATATAATAACAATTTTGAACCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCA
ATTCTAAATGAAACCACTGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTC
AATAAACAAGGTCGTATTTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCT
GATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATG
AATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGA
AGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAAAT
CCAAAACCATATCATAATTATCACTTCTGTGNNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID CHP736Z
3' end seq. 
>CHP736Z.Seq
NNNNNNNNNNGTTTGTCCATCCAAAGGTAAATGTCAAGTTGGTAAATGTGTTCCAGGNGT
TGGTTGTAAATATNAACCNCGNGTTTGTAAAGCTGATGCTTTNTGTTTAGNTGCTGAANG
TGATGAAANAGTTGGTTGTATTCAATTTGAAAANAAATGNGCTGCTGATAATGGTANANG
TCAAGCTGGTATTTGTAANAATGCNACTGCAACTGAANAAGGNACTTGNGAGTNTGTTGA
TTTCGATCCAAAACCNTTCATTTGTAAAACTGCTGCTGTTGTTTCAGTTGGNGTTGCTGT
TGGTGTTGCTGTTGGTGGNGCNATTGCNCTTGGNGTNTTTATTTTTGNTGGTAANAAAGG
TTATGACTACTGGAAAGCAAGTCAAGGTGTTACAANGGCCNCATCAAANGCCNATCCCCT
TTATGAAAGCNATCCNTCAGGTGGTGAAAATCCNATTTANACTAGCCCCNATTAGCAGTN
ATNACTTTTNAAAATCCATAAAAACCCCCNACTCAAACCCCC
Length of 3' end seq. 522
Connected seq. ID CHP736P
Connected seq. 
>CHP736P.Seq
ACTGTTGGCCTACTGGNAATCATTTAAATAATAAAAATAATAATTAATAATAATAAAAAT
AATAATAACAAATTGAAATTAATAAATCACACCAAAAAAACGTACACACACAAAAATAAT
AATAAAATGAAAAAGACTTTCATATTTTTATACTGTGTGGTTCTTTTTATTTCTACCACT
CTAGCAGTTGAAATGAAAAAAACTCAAGATTTTAATTTAAGAATTTTCGATCAACATCCA
AAATATAATAACAATTTTGAACCTGAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCA
ATTCTAAATGAAACCACTGGTATTCCAGAGTTAACCACAATGTCAAATCTTACAACTGTC
AATAAACAAGGTCGTATTTATTCACCAGAATTATTTAAATACTTTTTCGCTGATAATTCT
GATGCTCCAGATAGAAACAATAGTGGTAAAAATTATCCATTAGATATTACTCTTACAATG
AATTTAGATGATAAATCAAATTATTTTTATGATAATCAAGAATTTTTCCCAATTGATGGA
AGAGGATTTGATGTAGATCAACAATTCCGTAACTATTATGATGATGAAAGTAAAGCAAAT
CCAAAACCATATCATAATTATCACTTCTGTG----------GTTTGTCCATCCAAAGGTA
AATGTCAAGTTGGTAAATGTGTTCCAGGNGTTGGTTGTAAATATNAACCNCGNGTTTGTA
AAGCTGATGCTTTNTGTTTAGNTGCTGAANGTGATGAAANAGTTGGTTGTATTCAATTTG
AAAANAAATGNGCTGCTGATAATGGTANANGTCAAGCTGGTATTTGTAANAATGCNACTG
CAACTGAANAAGGNACTTGNGAGTNTGTTGATTTCGATCCAAAACCNTTCATTTGTAAAA
CTGCTGCTGTTGTTTCAGTTGGNGTTGCTGTTGGTGTTGCTGTTGGTGGNGCNATTGCNC
TTGGNGTNTTTATTTTTGNTGGTAANAAAGGTTATGACTACTGGAAAGCAAGTCAAGGTG
TTACAANGGCCNCATCAAANGCCNATCCCCTTTATGAAAGCNATCCNTCAGGTGGTGAAA
ATCCNATTTANACTAGCCCCNATTAGCAGTNATNACTTTTNAAAATCCATAAAAACCCCC
NACTCAAACCCCC
Length of connected seq. 1143
Full length Seq ID -
Full length Seq. -
Length of full length seq. -