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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP730
Library CH
(Link to library)
Clone ID CHP730
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15737-1
Original site URL
Representative seq. ID CHP730P
(Link to Original site)
Representative DNA sequence 
>CHP730 (CHP730Q) /CSM/CH/CHP7-B/CHP730Q.Seq.d/
CTGTTGGCCTACTGGNAACAATAAAAACAACTACAACAACAATAACAATAACAACAACAA
TTATTATATATATATATATATATATCTATCTATATATTACAAATTGAGTAATATATTTGT
ATTTATATCAACACATACAGAAAAATAAAAAAAAAAAAAAATNNTAANTANTAAATAAAA
AAATAAAAATAAAATAAAAATAAAATAAAANTAAAAAAAANTAAAAAANCCNNTAAAAAA
AAAAXXXXXXXXXXATTGGTACCACAGCAGCTTCTGTATATATATGTGAAAATAAAGTTT
ATATAGCAAATGTAGGTGATTCAAGAGTAGTTTTAGGTAAAATTATAGGTTCCGATAGTA
GTGGTAATAGCGGTGGTGGTGGAGGAGGAAGTGCTGAAGGCGGAGGTGATGAACAACAGC
AACTACAACAACAACAACAACAACAACCACAACCACAACAACAACAAAAAAAAACTACAG
CAGAAAGATTAACATTTGATCACAGACCTGTCGAAGAGTCTGAACGTTTACGAATTACAG
AAGCAGGCGGTACAGTTTTAAATGGACGTGTCAATGGAATGTTGGCAGTATCAAGAGCTT
TAGGTGACTCTTTCCTCACTCCTTATGTCATTCCAGATCCTCATCTATCTTCATTTACAA
TTTGCAAAAGATGATAAATTTTTAATTTTAGCTTGCGATGGTGTTTGGGATTTGATATCA
GATGAAGAAGCAGTTGAAACTATTGCAGGAATTTCAGATCCAAATAAAGCTGCAGAAACA
TTAAGAGATTTGGCTTACAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxq*kqlqqq*q*qqqllyiyiyisiyilqie*yiciyintyrkikkkknxxx*ik
k*k*NKNKIKXKKXKKXXKKK---

---IGTTAASVYICENKVYIANVGDSRVVLGKIIGSDSSGNSGGGGGGSAEGGGDEQQQL
QQQQQQQPQPQQQQKKTTAERLTFDHRPVEESERLRITEAGGTVLNGRVNGMLAVSRALG
DSFLTPYVIPDPHLSSFTICKR**ifnfslrwclgfdir*rss*nycrnfrsk*scrnik
rfglq
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxq*kqlqqq*q*qqqllyiyiyisiyilqie*yiciyintyrkikkkknxxx*ik
k*k*NKNKIKXKKXKKXXKKK---

---IGTTAASVYICENKVYIANVGDSRVVLGKIIGSDSSGNSGGGGGGSAEGGGDEQQQL
QQQQQQQPQPQQQQKKTTAERLTFDHRPVEESERLRITEAGGTVLNGRVNGMLAVSRALG
DSFLTPYVIPDPHLSSFTICKR**ifnfslrwclgfdir*rss*nycrnfrsk*scrnik
rfglq

Frame B:
cwptgnnknnynnnnnnnnnyyiyiyiylsiyyklsnifvfisthtek*kkkkxxxxk*k
nknkikik*x*kkxkxpxkkk---

---lvpqqllyiyvkikfi*qm*viqe*f*vkl*vpivvviavvveeevlkaevmnnsny
nnnnnnnhnhnnnkkklqqkd*hlitdlskslnvyelqkqavqf*mdvsmecwqyqel*v
tlssllmsfqiliylhlqfakddkflilacdgvwdlisdeeavetiagisdpnkaaetlr
dlayn

Frame C:
vgllxtiktttttititttiiiyiyiyiylyitn*viylylyqhiqknkkkkkx*xxnkk
ikik*k*nkxkkx*kxx*kk---

---wyhssfciym*k*slyskcr*fkssfr*nyrfr**w**rwwwrrkc*rrr**ttatt
tttttttttttttkknysrkini*sqtcrrv*tftnyrsrrysfkwtcqwnvgsiksfr*
lfphslchsrsssifiynlqkminf*f*lamvfgi*yqmkkqlkllqefqiqiklqkh*e
iwlt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP730 (CHP730Q) /CSM/CH/CHP7-B/CHP730Q.Seq.d/                        648   0.0
SSI871 (SSI871Q) /CSM/SS/SSI8-C/SSI871Q.Seq.d/                        632   e-180
SFK764 (SFK764Q) /CSM/SF/SFK7-C/SFK764Q.Seq.d/                        632   e-180
SFE317 (SFE317Q) /CSM/SF/SFE3-A/SFE317Q.Seq.d/                        632   e-180
CFG802 (CFG802Q) /CSM/CF/CFG8-A/CFG802Q.Seq.d/                        632   e-180
CFB462 (CFB462Q) /CSM/CF/CFB4-C/CFB462Q.Seq.d/                        632   e-180
AHE360 (AHE360Q) /CSM/AH/AHE3-C/AHE360Q.Seq.d/                        632   e-180
SHL355 (SHL355Q) /CSM/SH/SHL3-C/SHL355Q.Seq.d/                        626   e-178
CFD773 (CFD773Q) /CSM/CF/CFD7-D/CFD773Q.Seq.d/                        626   e-178
SSD493 (SSD493Q) /CSM/SS/SSD4-D/SSD493Q.Seq.d/                        618   e-176
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP008210|AP008210.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4.    48   0.005  3
AC022738|AC022738.3 Homo sapiens chromosome 3 clone RP11-556L15 map 3, WORKING DRAFT SEQUENCE, 26 unordered pieces.    50   0.069  1
BE185590|BE185590.1 IL5-HT0731-010500-078-h05 HT0731 Homo sapiens cDNA, mRNA sequence.    50   0.069  1
AC016252|AC016252.21 Homo sapiens 3 BAC RP11-461M2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    50   0.069  1
AR548740|AR548740.1 Sequence 3871 from patent US 6747137.          38   0.19   2
CR543861|CR543861.1 Acinetobacter sp. ADP1 complete genome.        48   0.27   1
AC136645|AC136645.2 Rattus norvegicus 7 BAC CH230-156H17 (Children's Hospital Oakland Research Institute) complete sequence.    48   0.27   1
CF991093|CF991093.1 15396rsicee_11262.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence.    48   0.27   1
CB654814|CB654814.1 OSJNEc07J24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc07J24 3', mRNA sequence.    48   0.27   1
AK070129|AK070129.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full insert sequence.    48   0.27   1
dna update 2005.10.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P35182) RecName: Full=Protein phosphatase 2C homolog 1;        ...    60   1e-18
AE017341_470(AE017341|pid:none) Cryptococcus neoformans var. neo...    63   2e-18
AE016818_337(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    58   3e-17
CR380949_181(CR380949|pid:none) Candida glabrata strain CBS138 c...    59   4e-17
AM270324_15(AM270324|pid:none) Aspergillus niger contig An14c017...    62   6e-17
CU633900_497(CU633900|pid:none) Podospora anserina genomic DNA c...    60   7e-17
CR382126_637(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    58   7e-17
CR382130_886(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    62   1e-16
AP007166_406(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    61   1e-16
Z48008_1(Z48008|pid:none) S.cerevisiae chromosome IV cosmid 8119.      57   2e-16
protein update 2009. 4.11
PSORT 

 psg: 0.43  gvh: 0.42  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHP730 is cyt
5' end seq. ID CHP730F
5' end seq. 
>CHP730F.Seq
CTGTTGGCCTACTGGNAACAATAAAAACAACTACAACAACAATAACAATAACAACAACAA
TTATTATATATATATATATATATATCTATCTATATATTACAAATTGAGTAATATATTTGT
ATTTATATCAACACATACAGAAAAATAAAAAAAAAAAAAAATNNTAANTANTAAATAAAA
AAATAAAAATAAAATAAAAATAAAATAAAANTAAAAAAAANTAAAAAANCCNNTAAAAAA
AAAANNNNNNNNNN
Length of 5' end seq. 254
3' end seq. ID CHP730Z
3' end seq. 
>CHP730Z.Seq
NNNNNNNNNNATTGGTACCACAGCAGCTTCTGTATATATATGTGAAAATAAAGTTTATAT
AGCAAATGTAGGTGATTCAAGAGTAGTTTTAGGTAAAATTATAGGTTCCGATAGTAGTGG
TAATAGCGGTGGTGGTGGAGGAGGAAGTGCTGAAGGCGGAGGTGATGAACAACAGCAACT
ACAACAACAACAACAACAACAACCACAACCACAACAACAACAAAAAAAAACTACAGCAGA
AAGATTAACATTTGATCACAGACCTGTCGAAGAGTCTGAACGTTTACGAATTACAGAAGC
AGGCGGTACAGTTTTAAATGGACGTGTCAATGGAATGTTGGCAGTATCAAGAGCTTTAGG
TGACTCTTTCCTCACTCCTTATGTCATTCCAGATCCTCATCTATCTTCATTTACAATTTG
CAAAAGATGATAAATTTTTAATTTTAGCTTGCGATGGTGTTTGGGATTTGATATCAGATG
AAGAAGCAGTTGAAACTATTGCAGGAATTTCAGATCCAAATAAAGCTGCAGAAACATTAA
GAGATTTGGCTTACAAT
Length of 3' end seq. 557
Connected seq. ID CHP730P
Connected seq. 
>CHP730P.Seq
CTGTTGGCCTACTGGNAACAATAAAAACAACTACAACAACAATAACAATAACAACAACAA
TTATTATATATATATATATATATATCTATCTATATATTACAAATTGAGTAATATATTTGT
ATTTATATCAACACATACAGAAAAATAAAAAAAAAAAAAAATNNTAANTANTAAATAAAA
AAATAAAAATAAAATAAAAATAAAATAAAANTAAAAAAAANTAAAAAANCCNNTAAAAAA
AAAA----------ATTGGTACCACAGCAGCTTCTGTATATATATGTGAAAATAAAGTTT
ATATAGCAAATGTAGGTGATTCAAGAGTAGTTTTAGGTAAAATTATAGGTTCCGATAGTA
GTGGTAATAGCGGTGGTGGTGGAGGAGGAAGTGCTGAAGGCGGAGGTGATGAACAACAGC
AACTACAACAACAACAACAACAACAACCACAACCACAACAACAACAAAAAAAAACTACAG
CAGAAAGATTAACATTTGATCACAGACCTGTCGAAGAGTCTGAACGTTTACGAATTACAG
AAGCAGGCGGTACAGTTTTAAATGGACGTGTCAATGGAATGTTGGCAGTATCAAGAGCTT
TAGGTGACTCTTTCCTCACTCCTTATGTCATTCCAGATCCTCATCTATCTTCATTTACAA
TTTGCAAAAGATGATAAATTTTTAATTTTAGCTTGCGATGGTGTTTGGGATTTGATATCA
GATGAAGAAGCAGTTGAAACTATTGCAGGAATTTCAGATCCAAATAAAGCTGCAGAAACA
TTAAGAGATTTGGCTTACAAT
Length of connected seq. 791
Full length Seq ID -
Full length Seq. -
Length of full length seq. -