>CHP689 (CHP689Q) /CSM/CH/CHP6-D/CHP689Q.Seq.d/
ACTGTTGGCCTACTGGTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGAT
AAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGG
ACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGG
ACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAA
GTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAAT
TCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTT
ACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTC
GATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTG
AAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGC
ACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAG
GAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAAXXXXXXXXXXAGAGG
TGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGC
TGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTG
TTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGT
TAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGG
AACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTA
CCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATTCATTCTAGAAACGCAAACC
AAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTC
AACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTG
GGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTNCTTCGATTGTAGACGACTA
TCAAATGAACTAGGTGCTGTAAGCTCCCGAGTAGCGTTCAGTTACGAGGGGT

tvgllvvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspakw
tspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgsskyskef
tlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag*NSC
TIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGSSE---

---RGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*t
vvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnsf
*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstxs
ivddyqmn*vl*ape*rsvtrg

Frame A:
tvgllvvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspakw
tspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgsskyskef
tlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag*NSC
TIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGSSE---

---RGVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*t
vvrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnsf
*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstxs
ivddyqmn*vl*ape*rsvtrg

Frame B:
llayww*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakecvtthlpng
lalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqilmvvaniqknl
l*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpkgkrvkipa
psngilg*pivirdinwrsrksylflltlswgpp---

---evseklpqg*lacgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrp
s*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vrihs
rnanqml*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqllr
l*ttik*trccklpssvqlrg

Frame C:
cwptggkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv*qltcqmd
*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w**qifkriy
fegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrkgsglkflh
hrmgy*gnrs*sgtsiggrgrvifsc*hclgvlr---

---rcqksyhrdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldr
retg*fyptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksefil
etqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnxfd
crrlsnelgavssrvafsyeg

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP689 (CHP689Q) /CSM/CH/CHP6-D/CHP689Q.Seq.d/                       2416   0.0
VHI876 (VHI876Q) /CSM/VH/VHI8-D/VHI876Q.Seq.d/                       1243   0.0
CHO461 (CHO461Q) /CSM/CH/CHO4-C/CHO461Q.Seq.d/                       1239   0.0
VHI308 (VHI308Q) /CSM/VH/VHI3-A/VHI308Q.Seq.d/                       1231   0.0
VHQ367 (VHQ367Q) /CSM/VH/VHQ3-C/VHQ367Q.Seq.d/                       1213   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1201   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1199   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1199   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1199   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1199   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1247   0.0    2
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1231   0.0    1
AC136838|AC136838.32 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 12 unordered pieces.   343   0.0    20
AC121240|AC121240.27 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 ordered pieces.   343   0.0    20
AC151591|AC151591.1 Nematostella vectensis clone JGIAFIN-297A8, WORKING DRAFT SEQUENCE, 3 unordered pieces.   335   0.0    10
AC150267|AC150267.2 Zea mays clone ZMMBBc0319N15, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.   343   0.0    13
AL158197|AL158197.26 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-368H14.   325   0.0    10
DQ158858|DQ158858.1 Bigelowiella natans nucleomorph chromosome 3, partial sequence.   327   0.0    15
DQ158856|DQ158856.1 Bigelowiella natans nucleomorph chromosome 1, partial sequence.   319   0.0    15
DQ158857|DQ158857.1 Bigelowiella natans nucleomorph chromosome 2, partial sequence.   319   0.0    15

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   132   3e-29
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    78   5e-13
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    70   1e-10
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    69   3e-10
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    66   2e-09
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   3e-08
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    54   8e-06
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.007
BC115436_1(BC115436|pid:none) Mus musculus leucyl-tRNA synthetas...    44   0.011

 psg: 0.75  gvh: 0.45  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHP689 is cyt

>CHP689F.Seq
ACTGTTGGCCTACTGGTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGAT
AAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGG
ACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGG
ACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAA
GTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAAT
TCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTT
ACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTC
GATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTG
AAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGC
ACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAG
GAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAANNNNNNNNNN

>CHP689Z.Seq
NNNNNNNNNNAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAG
CGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGC
AGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGAC
CGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATG
ATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAAT
AGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATTCATT
CTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGG
TGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTT
CCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTNCTTC
GATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTCCCGAGTAGCGTTCAGTTAC
GAGGGGT

>CHP689P.Seq
ACTGTTGGCCTACTGGTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGAT
AAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAGCAGG
ACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGCCAAATGG
ACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTTAAAAGAA
GTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAATGTGAAT
TCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAAAGAATTT
ACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGGGTGAGTC
GATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATCGAAAGTG
AAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAATTCCTGC
ACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGCGGTCGAG
GAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCCGAA----------AGAGG
TGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGC
TGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTG
TTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGT
TAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGG
AACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTA
CCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATTCATTCTAGAAACGCAAACC
AAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTC
AACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTG
GGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTNCTTCGATTGTAGACGACTA
TCAAATGAACTAGGTGCTGTAAGCTCCCGAGTAGCGTTCAGTTACGAGGGGT