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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP681
Library CH
(Link to library)
Clone ID CHP681
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHP681P
(Link to Original site)
Representative DNA sequence 
>CHP681 (CHP681Q) /CSM/CH/CHP6-D/CHP681Q.Seq.d/
ACTGTTGGCCTACTGGAAATAATAGNAAATAATAAAAATTAATATTAAAAAAAAGGAACG
TTAAAAAAAAAAAGAATTTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAG
TAAAAAATATNCATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNC
ATCTAATCAAATTTCTGAANATGTGGGTAAAGCAATTAATCAAAAATTAAATGAAAATAT
TGAAAAAGTTGAANATGTAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAAGA
ATTAAAAGTTGANCATCAAAGACAANAATTATTAGGNGAAGTAAAACATGATTCATTAAG
AGACTCTGCANCAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAA
AGACAACAATAAAGTTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATAT
CGGTAGCAGTATTGGNGATTCAACTGGNGCTAGTACTTCCCCACAATTCCAAAGTATAAA
TGGTTTATCCGGAXXXXXXXXXXGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTG
TAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAAC
AAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCC
AACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAA
TGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATT
TACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAG
CAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGAC
AAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTNTACTTGAGTGATG
TTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATC
AAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAA
AAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAA
ATCAACAATTATTAGAACAAGAACAAANCAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywk**xiikinikkker*kkkeflflflklv*LKMYSKKYXSFVIVLILSCIISTCX
SNQISEXVGKAINQKLNENIEKVEXVVVQFXNVANQVIEELKVXHQRQXLLGEVKHDSLR
DSAXNYIWGLLDKIQSYLPKDNNKVSKVEXAFSXGQNNNIGSSIGDSTGASTSPQFQSIN
GLSG---

---GNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVA
FLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVE
QQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENL
VQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQXKN
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglleiixnnkn*y*kkgtlkkkrisfsffeigiiknv**kixilcnsidfimyhfnmx
i*snf*xcg*sn*skik*ky*ks*xcscxi*xcckssy*riks*xsktxiirxskt*fik
rlcxklhlgit**nsklftkrqq*sfks*xsifkxpk**yr*qywxfnwx*yfptipkyk
wfir---

---GNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVA
FLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVE
QQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENL
VQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQXKN

Frame B:
llaywk**xiikinikkker*kkkeflflflklv*LKMYSKKYXSFVIVLILSCIISTCX
SNQISEXVGKAINQKLNENIEKVEXVVVQFXNVANQVIEELKVXHQRQXLLGEVKHDSLR
DSAXNYIWGLLDKIQSYLPKDNNKVSKVEXAFSXGQNNNIGSSIGDSTGASTSPQFQSIN
GLSG---

---vmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklp
f*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmln
nkslnnlklsknfkdkinkrnkkfnkrtmlxt*vmlkklnlnwmlnwlkiinkrikmri*
fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkxki

Frame C:
cwptgnnxk**klilkkrnvkkkknfffff*nwyn*kcivknxhpl**y*fyhvsfqhvh
likflxmwvkqlikn*mkilkklxm*lxnlxmlqikllkn*klxikdxny*xk*nmih*e
tlxqitfgdylikfkviyqkttikfqklxkhfqxakiiisvavlxiqlxlvlphnskv*m
vyp---

---*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*scl
fr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*t
tnr*tt*syqrisktrstketknstrerccxle*c*ksst*igc*ig*k**tresr*efs
srettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtxqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        599   e-170
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        599   e-170
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        599   e-170
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        599   e-170
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        599   e-170
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        599   e-170
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        599   e-170
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        599   e-170
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        599   e-170
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        599   e-170
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   599   0.0    7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   2e-32  18
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    38   5e-11  30
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          40   3e-10  30
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   3e-10  25
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    38   2e-09  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-09  25
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome.    36   9e-09  27
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    38   1e-08  16
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   1e-08  17
dna update 2005.10.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   242   2e-62
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   4.0
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   6.8
protein update 2009. 4.11
PSORT 

 psg: 0.98  gvh: 0.71  alm: 0.49  top: 0.27  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHP681 is nuc
5' end seq. ID CHP681F
5' end seq. 
>CHP681F.Seq
ACTGTTGGCCTACTGGAAATAATAGNAAATAATAAAAATTAATATTAAAAAAAAGGAACG
TTAAAAAAAAAAAGAATTTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAG
TAAAAAATATNCATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNC
ATCTAATCAAATTTCTGAANATGTGGGTAAAGCAATTAATCAAAAATTAAATGAAAATAT
TGAAAAAGTTGAANATGTAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAAGA
ATTAAAAGTTGANCATCAAAGACAANAATTATTAGGNGAAGTAAAACATGATTCATTAAG
AGACTCTGCANCAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAA
AGACAACAATAAAGTTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATAT
CGGTAGCAGTATTGGNGATTCAACTGGNGCTAGTACTTCCCCACAATTCCAAAGTATAAA
TGGTTTATCCGGANNNNNNNNNN
Length of 5' end seq. 563
3' end seq. ID CHP681Z
3' end seq. 
>CHP681Z.Seq
NNNNNNNNNNGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGG
AAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTT
ACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGC
CTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGA
ACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAA
TGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGA
ACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAA
GAAACAAAAAATTCAACAAGAGAACGATGCTGTNTACTTGAGTGATGTTGAAAAAGCTCA
ACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTT
AGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACA
TGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATT
AGAACAAGAACAAANCAAAAATA
Length of 3' end seq. 683
Connected seq. ID CHP681P
Connected seq. 
>CHP681P.Seq
ACTGTTGGCCTACTGGAAATAATAGNAAATAATAAAAATTAATATTAAAAAAAAGGAACG
TTAAAAAAAAAAAGAATTTCTTTTTCTTTTTTTGAAATTGGTATAATTAAAAATGTATAG
TAAAAAATATNCATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTNC
ATCTAATCAAATTTCTGAANATGTGGGTAAAGCAATTAATCAAAAATTAAATGAAAATAT
TGAAAAAGTTGAANATGTAGTTGTNCAATTTGANAATGTTGCAAATCAAGTTATTGAAGA
ATTAAAAGTTGANCATCAAAGACAANAATTATTAGGNGAAGTAAAACATGATTCATTAAG
AGACTCTGCANCAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAA
AGACAACAATAAAGTTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATAT
CGGTAGCAGTATTGGNGATTCAACTGGNGCTAGTACTTCCCCACAATTCCAAAGTATAAA
TGGTTTATCCGGA----------GGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTG
TAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAAC
AAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCC
AACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAA
TGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATT
TACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAG
CAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGAC
AAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTNTACTTGAGTGATG
TTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATC
AAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAA
AAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAA
ATCAACAATTATTAGAACAAGAACAAANCAAAAATA
Length of connected seq. 1226
Full length Seq ID -
Full length Seq. -
Length of full length seq. -