>CHP665 (CHP665Q) /CSM/CH/CHP6-C/CHP665Q.Seq.d/
CTGTTGGCCTACTGGNTTTTTATATTTTTTAAAAAATATATATATATAATTTATATTTAT
ATATTATTATTTTTGTAATATTAGTCAAAAAACGATATCTTAAATATGTCAAGCGGGAAT
CCATTTGATAATGGGAACCCGAATGATGGTAATAAAAGTCCATCAATAGATGAATTATAT
AGTCCAAGCGAATCTTTAGCAAGAGATGGTGATGATAATAATAATAACAACAACAACAAC
AACAACAATAATAATAATAACAATAATAATAATAATTCAAGCGTATCAGAAAAAAAAAAG
AGTAAAAAAAAAGTTAGAATTCAAGAAGAAGAAAGATTAACAGAATCATATGATGATGAT
GGNGATGATGAANAAAGAANAGCATACNTTGAAAATGAANAGGGAGAGGAGGAGGANACT
GAGGATGGTNTAATATTACAACCAATTGTTAGAGATCATTCAACATATAGACCAAAGAAT
TTGTATGGGTCAAGTGACGAXXXXXXXXXXCTTACCATTGATGTTGACAGTTATGACTGC
CAAATGGGTTGCCGATGCTCTCATTCATCCATTGTTTGATCTTTTGATGCAAATGAAATA
CATTCCATACCTCGAACCAAATCCATCCAAAGAGATGAAATTGATGATGTGTAAACATAT
CATGGCAAAGAAACCAGTCTATTTGGCAGAGAAAGACACCTTGGGCAATATCCTTCGTGT
CTTGAAAGAAACTCGTCACAATGGTTTCCCAGTGGTCAACAATGACGAGGAGAAGTTGGT
CAAAGGTCTCATTTTACGTACTCAATTATTAATGATTTTAGAACGTATCTCTGATGTTTA
CATTCCAAACTCTGAAGCAATCTATTCTCACATTGAATATACCACCAAATTAACCTGGAA
ATTACCATCGGTCAATGATTTCAATTTCGATCCAGCTGATTACTCTCAAGAGATTGATCT
TACCGATGTTATGAATTTAACTGTAATCACCGTTAACGTTGAATTTGCAGTTAGTGAAGC
TTTTCAATTATTCAGAACAATGGGTTTACGTCATATGCCTGTTGTAAATGAAAATAACAA
ACTCAAAGGTATTATCACTAAAAAGGTNCTTTTAGAAAAAACTTGTGAACAAAGATATCG
TGAATTAAATNCATATGTAAATGGGTNT

llaywxfiffkkyiyiiyiyillfl*y*SKNDILNMSSGNPFDNGNPNDGNKSPSIDELY
SPSESLARDGDDNNNNNNNNNNNNNNNNNNNNSSVSEKKKSKKKVRIQEEERLTESYDDD
GDDEXRXAYXENEXGEEEXTEDGXILQPIVRDHSTYRPKNLYGSSD---

---LPLMLTVMTAKWVADALIHPLFDLLMQMKYIPYLEPNPSKEMKLMMCKHIMAKKPVY
LAEKDTLGNILRVLKETRHNGFPVVNNDEEKLVKGLILRTQLLMILERISDVYIPNSEAI
YSHIEYTTKLTWKLPSVNDFNFDPADYSQEIDLTDVMNLTVITVNVEFAVSEAFQLFRTM
GLRHMPVVNENNKLKGIITKKVLLEKTCEQRYRELNXYVNGX

Frame A:
llaywxfiffkkyiyiiyiyillfl*y*SKNDILNMSSGNPFDNGNPNDGNKSPSIDELY
SPSESLARDGDDNNNNNNNNNNNNNNNNNNNNSSVSEKKKSKKKVRIQEEERLTESYDDD
GDDEXRXAYXENEXGEEEXTEDGXILQPIVRDHSTYRPKNLYGSSD---

---ltidvdsydcqmgcrcshssiv*sfdaneihsiprtksiqrdeiddv*tyhgketsl
fgrerhlgqypsclernssqwfpsgqq*rgevgqrshftysiindfrtyl*clhskl*sn
lfsh*iyhqinleitigq*fqfrss*llsrd*syrcyefncnhr*r*ics**sfsiiqnn
gftsyacck*k*qtqryyh*kgxfrknl*tkis*ikxickwv

Frame B:
cwptgflyflkniyi*fifiyyyfcnisqktis*icqagihlimgtrmmvikvhq*mnyi
vqanl*qemvmiiiitttttttiiiitiiiiiqayqkkkrvkkklefkkkkd*qnhmmmm
xmmxkexhtlkmxrerrrxlrmv*yynqlleiiqhidqricmgqvt---

---LPLMLTVMTAKWVADALIHPLFDLLMQMKYIPYLEPNPSKEMKLMMCKHIMAKKPVY
LAEKDTLGNILRVLKETRHNGFPVVNNDEEKLVKGLILRTQLLMILERISDVYIPNSEAI
YSHIEYTTKLTWKLPSVNDFNFDPADYSQEIDLTDVMNLTVITVNVEFAVSEAFQLFRTM
GLRHMPVVNENNKLKGIITKKVLLEKTCEQRYRELNXYVNGX

Frame C:
vgllxfyif*kiyiynlylyiiifvilvkkrylkyvkresi**wepe*w**ksinr*ii*
skrifskrw******qqqqqqq****q****fkrirkkke*kks*nsrrrkinrii***w
x**xkxsix*k*xgrgggx*gwxnittnc*rsfni*tkefvwvk*r---

---yh*c*ql*lpnglpmlsfihclif*ck*ntfhtsnqihpkr*n**cvniswqrnqsi
wqrktpwaisfvs*kklvtmvsqwstmtrrswskvsfyvlny**f*nvslmftfqtlkqs
iltlnippn*pgnyhrsmisisiqlitlkrlilpml*i*l*spltlnlqlvklfnyseqw
vyvicll*mkitnskvlslkrxf*kklvnkdivn*xhm*mg

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP665 (CHP665Q) /CSM/CH/CHP6-C/CHP665Q.Seq.d/                       1471   0.0
CHE568 (CHE568Q) /CSM/CH/CHE5-C/CHE568Q.Seq.d/                       1255   0.0
AHM417 (AHM417Q) /CSM/AH/AHM4-A/AHM417Q.Seq.d/                       1247   0.0
AHF366 (AHF366Q) /CSM/AH/AHF3-C/AHF366Q.Seq.d/                       1247   0.0
VHC793 (VHC793Q) /CSM/VH/VHC7-D/VHC793Q.Seq.d/                       1239   0.0
VHN886 (VHN886Q) /CSM/VH/VHN8-D/VHN886Q.Seq.d/                       1223   0.0
VHL141 (VHL141Q) /CSM/VH/VHL1-B/VHL141Q.Seq.d/                       1223   0.0
VHI419 (VHI419Q) /CSM/VH/VHI4-A/VHI419Q.Seq.d/                       1223   0.0
VHB824 (VHB824Q) /CSM/VH/VHB8-A/VHB824Q.Seq.d/                       1223   0.0
SHK875 (SHK875Q) /CSM/SH/SHK8-D/SHK875Q.Seq.d/                       1223   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR753902|CR753902.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-45C16.    36   0.41   8
AC136769|AC136769.3 Homo sapiens chromosome 11 clone RP13-43P9 map 11, LOW-PASS SEQUENCE SAMPLING.    38   0.43   5
CJ490330|CJ490330.1 Macaca fascicularis mRNA, clone: QtsA-18119, 5' end, expressed in testis.    34   0.86   3
CW998150|CW998150.1 OA_BBa0077C03.f OA_BBa Oryza alta genomic clone OA_BBa0077C03 5', genomic survey sequence.    46   1.6    1
AP004660|AP004660.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0047G03, WORKING DRAFT SEQUENCE, 1 ordered pieces.    46   1.6    1
CZ574761|CZ574761.1 OA_BBa0190K22.f OA_BBa Oryza alta genomic clone OA_BBa0190K22 5', genomic survey sequence.    46   1.6    1
BJ562999|BJ562999.1 Ipomoea nil cDNA clone:jm38k22, 5' end, single read.    46   1.6    1
CL819928|CL819928.1 OR_CBa0038F19.r OR_CBa Oryza rufipogon genomic clone OR_CBa0038F19 3', genomic survey sequence.    46   1.6    1
AQ689885|AQ689885.1 nbxb0080F20f CUGI Rice BAC Library Oryza sativa genomic clone nbxb0080F20f, DNA sequence.    46   1.6    1
AP008214|AP008214.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8.    46   1.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXJ0) RecName: Full=Chloride channel protein D;                    408   e-112
AE013599_1591(AE013599|pid:none) Drosophila melanogaster chromos...   111   4e-23
BC073264_1(BC073264|pid:none) Xenopus laevis MGC80627 protein, m...   109   2e-22
DQ440134_1(DQ440134|pid:none) Aedes aegypti clone AE-9505 chlori...   108   4e-22
(Q54AX6) RecName: Full=Chloride channel protein A;  &AF414428_1(...   107   6e-22
T24009(T24009)hypothetical protein R07B7.1 - Caenorhabditis eleg...   103   1e-20
AF319616_1(AF319616|pid:none) Caenorhabditis elegans CLC-type ch...   103   1e-20
BC125873_1(BC125873|pid:none) Danio rerio chloride channel 7, mR...   103   1e-20
BC091969_1(BC091969|pid:none) Danio rerio chloride channel 7, mR...   102   3e-20
AK292136_1(AK292136|pid:none) Homo sapiens cDNA FLJ78478 complet...   101   5e-20

 psg: 0.77  gvh: 0.47  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHP665 is cyt

>CHP665F.Seq
CTGTTGGCCTACTGGNTTTTTATATTTTTTAAAAAATATATATATATAATTTATATTTAT
ATATTATTATTTTTGTAATATTAGTCAAAAAACGATATCTTAAATATGTCAAGCGGGAAT
CCATTTGATAATGGGAACCCGAATGATGGTAATAAAAGTCCATCAATAGATGAATTATAT
AGTCCAAGCGAATCTTTAGCAAGAGATGGTGATGATAATAATAATAACAACAACAACAAC
AACAACAATAATAATAATAACAATAATAATAATAATTCAAGCGTATCAGAAAAAAAAAAG
AGTAAAAAAAAAGTTAGAATTCAAGAAGAAGAAAGATTAACAGAATCATATGATGATGAT
GGNGATGATGAANAAAGAANAGCATACNTTGAAAATGAANAGGGAGAGGAGGAGGANACT
GAGGATGGTNTAATATTACAACCAATTGTTAGAGATCATTCAACATATAGACCAAAGAAT
TTGTATGGGTCAAGTGACGANNNNNNNNNN

>CHP665Z.Seq
NNNNNNNNNNCTTACCATTGATGTTGACAGTTATGACTGCCAAATGGGTTGCCGATGCTC
TCATTCATCCATTGTTTGATCTTTTGATGCAAATGAAATACATTCCATACCTCGAACCAA
ATCCATCCAAAGAGATGAAATTGATGATGTGTAAACATATCATGGCAAAGAAACCAGTCT
ATTTGGCAGAGAAAGACACCTTGGGCAATATCCTTCGTGTCTTGAAAGAAACTCGTCACA
ATGGTTTCCCAGTGGTCAACAATGACGAGGAGAAGTTGGTCAAAGGTCTCATTTTACGTA
CTCAATTATTAATGATTTTAGAACGTATCTCTGATGTTTACATTCCAAACTCTGAAGCAA
TCTATTCTCACATTGAATATACCACCAAATTAACCTGGAAATTACCATCGGTCAATGATT
TCAATTTCGATCCAGCTGATTACTCTCAAGAGATTGATCTTACCGATGTTATGAATTTAA
CTGTAATCACCGTTAACGTTGAATTTGCAGTTAGTGAAGCTTTTCAATTATTCAGAACAA
TGGGTTTACGTCATATGCCTGTTGTAAATGAAAATAACAAACTCAAAGGTATTATCACTA
AAAAGGTNCTTTTAGAAAAAACTTGTGAACAAAGATATCGTGAATTAAATNCATATGTAA
ATGGGTNT

>CHP665P.Seq
CTGTTGGCCTACTGGNTTTTTATATTTTTTAAAAAATATATATATATAATTTATATTTAT
ATATTATTATTTTTGTAATATTAGTCAAAAAACGATATCTTAAATATGTCAAGCGGGAAT
CCATTTGATAATGGGAACCCGAATGATGGTAATAAAAGTCCATCAATAGATGAATTATAT
AGTCCAAGCGAATCTTTAGCAAGAGATGGTGATGATAATAATAATAACAACAACAACAAC
AACAACAATAATAATAATAACAATAATAATAATAATTCAAGCGTATCAGAAAAAAAAAAG
AGTAAAAAAAAAGTTAGAATTCAAGAAGAAGAAAGATTAACAGAATCATATGATGATGAT
GGNGATGATGAANAAAGAANAGCATACNTTGAAAATGAANAGGGAGAGGAGGAGGANACT
GAGGATGGTNTAATATTACAACCAATTGTTAGAGATCATTCAACATATAGACCAAAGAAT
TTGTATGGGTCAAGTGACGA----------CTTACCATTGATGTTGACAGTTATGACTGC
CAAATGGGTTGCCGATGCTCTCATTCATCCATTGTTTGATCTTTTGATGCAAATGAAATA
CATTCCATACCTCGAACCAAATCCATCCAAAGAGATGAAATTGATGATGTGTAAACATAT
CATGGCAAAGAAACCAGTCTATTTGGCAGAGAAAGACACCTTGGGCAATATCCTTCGTGT
CTTGAAAGAAACTCGTCACAATGGTTTCCCAGTGGTCAACAATGACGAGGAGAAGTTGGT
CAAAGGTCTCATTTTACGTACTCAATTATTAATGATTTTAGAACGTATCTCTGATGTTTA
CATTCCAAACTCTGAAGCAATCTATTCTCACATTGAATATACCACCAAATTAACCTGGAA
ATTACCATCGGTCAATGATTTCAATTTCGATCCAGCTGATTACTCTCAAGAGATTGATCT
TACCGATGTTATGAATTTAACTGTAATCACCGTTAACGTTGAATTTGCAGTTAGTGAAGC
TTTTCAATTATTCAGAACAATGGGTTTACGTCATATGCCTGTTGTAAATGAAAATAACAA
ACTCAAAGGTATTATCACTAAAAAGGTNCTTTTAGAAAAAACTTGTGAACAAAGATATCG
TGAATTAAATNCATATGTAAATGGGTNT