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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP637
Library CH
(Link to library)
Clone ID CHP637
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10836-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHP637 (CHP637Q) /CSM/CH/CHP6-B/CHP637Q.Seq.d/
ACTGTTGGCCTACTGGNATTATATAATTAACCCTATAAAATTTAATTACATGAAAAAATG
AAATTAATTATTTTTATTATTTTTATATATTTATTTATTATTCCTATTTTTTCTCAACCA
AACCCAAAAAGTTTTTTAAATACAGATACAACAATTACATTTGAATGGAATTTAAATGAT
AATAATTATTATACAAAATGGATAATTATTAGACCCAATGATGCAAAATTAGAAATGCCA
TTTAATTGTGTAAAAGGCGAAACATCATTAAAGTGTGTTTATACTAATTCCGACTCAACA
GTTAATCAATTATATGGTAAAAATGTAACAGCATGTATTAATAGTTTAGGAGGTAATTGT
GATACCCCATTAAGTCCACTTCATTATCCAACACCAATTTTAAAATCACCAATTCCAGAA
ATACCAGTTGATGGTGGTGAAGTTGTTATAACTGGTTCATTTTTAAAATTTGTAGAATCA
CCAAACTACTATGAAATTGTTGGAACTGAAAATAAAATTACATTTATTGATGATTTAACT
AAACAAGAATTCAATCCAACAAATGTAACATTAAGATTCCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxlyn*pyki*LHEKMKLIIFIIFIYLFIIPIFSQPNPKSFLNTDTTITFEWNLND
NNYYTKWIIIRPNDAKLEMPFNCVKGETSLKCVYTNSDSTVNQLYGKNVTACINSLGGNC
DTPLSPLHYPTPILKSPIPEIPVDGGEVVITGSFLKFVESPNYYEIVGTENKITFIDDLT
KQEFNPTNVTLRF---
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxlyn*pyki*LHEKMKLIIFIIFIYLFIIPIFSQPNPKSFLNTDTTITFEWNLND
NNYYTKWIIIRPNDAKLEMPFNCVKGETSLKCVYTNSDSTVNQLYGKNVTACINSLGGNC
DTPLSPLHYPTPILKSPIPEIPVDGGEVVITGSFLKFVESPNYYEIVGTENKITFIDDLT
KQEFNPTNVTLRF---


Frame B:
llaywxyiinpikfnymkk*n*lfllflyiyllflfflnqtqkvf*iqiqqlhlngi*mi
iiiiqng*lldpmmqn*kchliv*kakhh*svfiliptqqlinymvkm*qhvliv*eviv
iph*vhfiiqhqf*nhqfqkyqlmvvkll*lvhf*nl*nhqttmkllelkiklhllmi*l
nknsiqqm*h*d---


Frame C:
cwptgii*ltl*nlit*kneinyfyyfyifiyysyffstkpkkffkyrynnyi*mefk**
*llykmdny*tq*ckirnai*lckrrniikvcly*frlns*siiw*kcnsmy**frr*l*
ypikstslsntnfkitnsrnts*ww*scynwfifkicritkll*ncwn*k*nyiy**fn*
triqsnkcniki---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL760 (SHL760Q) /CSM/SH/SHL7-C/SHL760Q.Seq.d/                        928   0.0
SHL107 (SHL107Q) /CSM/SH/SHL1-A/SHL107Q.Seq.d/                        928   0.0
SHK574 (SHK574Q) /CSM/SH/SHK5-D/SHK574Q.Seq.d/                        928   0.0
SHJ447 (SHJ447Q) /CSM/SH/SHJ4-B/SHJ447Q.Seq.d/                        928   0.0
SHJ213 (SHJ213Q) /CSM/SH/SHJ2-A/SHJ213Q.Seq.d/                        928   0.0
SHJ124 (SHJ124Q) /CSM/SH/SHJ1-A/SHJ124Q.Seq.d/                        928   0.0
SHH283 (SHH283Q) /CSM/SH/SHH2-D/SHH283Q.Seq.d/                        928   0.0
SHE479 (SHE479Q) /CSM/SH/SHE4-D/SHE479Q.Seq.d/                        928   0.0
SFJ539 (SFJ539Q) /CSM/SF/SFJ5-B/SFJ539Q.Seq.d/                        928   0.0
CHS401 (CHS401Q) /CSM/CH/CHS4-A/CHS401Q.Seq.d/                        928   0.0
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   892   0.0    6
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    60   6e-09  7
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    32   1e-04  11
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   2e-04  18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   3e-04  18
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   4e-04  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   6e-04  12
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40   7e-04  11
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   0.001  11
CR933786|CR933786.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   0.001  7
dna update 2005.10. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...   315   4e-85
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso...   110   3e-23
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    53   7e-06
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...    43   0.005
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...    43   0.005
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...    42   0.012
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...    40   0.045
FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS...    40   0.045
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS...    40   0.045
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...    40   0.045
protein update 2009. 4.11
PSORT 

 psg: 1.02  gvh: 0.70  alm: 0.46  top: 0.30  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for CHP637 is exc
5' end seq. ID CHP637F
5' end seq. 
>CHP637F.Seq
ACTGTTGGCCTACTGGNATTATATAATTAACCCTATAAAATTTAATTACATGAAAAAATG
AAATTAATTATTTTTATTATTTTTATATATTTATTTATTATTCCTATTTTTTCTCAACCA
AACCCAAAAAGTTTTTTAAATACAGATACAACAATTACATTTGAATGGAATTTAAATGAT
AATAATTATTATACAAAATGGATAATTATTAGACCCAATGATGCAAAATTAGAAATGCCA
TTTAATTGTGTAAAAGGCGAAACATCATTAAAGTGTGTTTATACTAATTCCGACTCAACA
GTTAATCAATTATATGGTAAAAATGTAACAGCATGTATTAATAGTTTAGGAGGTAATTGT
GATACCCCATTAAGTCCACTTCATTATCCAACACCAATTTTAAAATCACCAATTCCAGAA
ATACCAGTTGATGGTGGTGAAGTTGTTATAACTGGTTCATTTTTAAAATTTGTAGAATCA
CCAAACTACTATGAAATTGTTGGAACTGAAAATAAAATTACATTTATTGATGATTTAACT
AAACAAGAATTCAATCCAACAAATGTAACATTAAGATTCCNNNNNNNNNN
Length of 5' end seq. 590
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -