>CHP635 (CHP635Q) /CSM/CH/CHP6-B/CHP635Q.Seq.d/
XXXXXXXXXXACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGGTTCA
AAGTAANCCAAGGTACTGAACATCCAAATAGTACTGGTGCAACACCATCCTCANCAAATT
CAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAATCACCAAAAT
TGGGTGGTGATGGTATAGACTCTCAATCATCCACTCCAAATAAACAACAACTACCTCCAC
CACCACCACAACAAACAAAGAAAACCCAAATGGTATCTCATTTCATGCCAACTGATGAAT
GGTTACAAGATATTAAAAAACAATTACCATTAGATAATATCTTAAAAGTTATAACTCATT
TATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATCTGACGAACAAAAAATCATGG
ACTACTTGAAAATGTCAACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAATGACTC
GTCGTTATCATTCAAATGCTATTACAAAATGCTTGGTTCATTGCATACATGTGGTGTATC
ATNTTATTTAGAAA

---LMVVIIKMNQFQSQRFKVXQGTEHPNSTGATPSSXNSGTPTIKAFSSTTPNQESPKL
GGDGIDSQSSTPNKQQLPPPPPQQTKKTQMVSHFMPTDEWLQDIKKQLPLDNILKVITHL
SPQIQGLCTGSGSDEQKIMDYLKMSTIVGIFHNPGPIMTRRYHSNAITKCLVHCIHVVYH
XI*k

Frame A:
---LMVVIIKMNQFQSQRFKVXQGTEHPNSTGATPSSXNSGTPTIKAFSSTTPNQESPKL
GGDGIDSQSSTPNKQQLPPPPPQQTKKTQMVSHFMPTDEWLQDIKKQLPLDNILKVITHL
SPQIQGLCTGSGSDEQKIMDYLKMSTIVGIFHNPGPIMTRRYHSNAITKCLVHCIHVVYH
XI*k


Frame B:
---*ww*ssr*infkvkgsk*xkvlniqivlvqhhpxqiqehqlsklfqvqhqiknhqnw
vvmv*tlnhplqinnnylhhhhnkqrkpkwyliscqlmngykilknnyh*iis*kl*liy
hhkfkvyalvrdltnkkswtt*kcqqllafsitqvq**lvviiqmllqnawfiaymwcix
lfr


Frame C:
---dggdhqdesiskskvqsxpry*tsk*ywcntilxkfrntnyqsffkyntksritkig
w*wyrlsiihsk*ttttstttttnkenpngisfhan**mvtry*ktitir*ylksynsfi
ttnsrfmhwfgi*rtknhgllenvnncwhfp*prsnndsslsfkcyykmlgslhtcgvsx
yle

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP635 (CHP635Q) /CSM/CH/CHP6-B/CHP635Q.Seq.d/                       1061   0.0
CHN380 (CHN380Q) /CSM/CH/CHN3-D/CHN380Q.Seq.d/                       1015   0.0
VHN140 (VHN140Q) /CSM/VH/VHN1-B/VHN140Q.Seq.d/                       1011   0.0
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/                       1011   0.0
SHL344 (SHL344Q) /CSM/SH/SHL3-B/SHL344Q.Seq.d/                       1011   0.0
SHH382 (SHH382Q) /CSM/SH/SHH3-D/SHH382Q.Seq.d/                       1011   0.0
SHD882 (SHD882Q) /CSM/SH/SHD8-D/SHD882Q.Seq.d/                       1011   0.0
SHD356 (SHD356Q) /CSM/SH/SHD3-C/SHD356Q.Seq.d/                       1011   0.0
CHQ792 (CHQ792Q) /CSM/CH/CHQ7-D/CHQ792Q.Seq.d/                       1011   0.0
CHM584 (CHM584Q) /CSM/CH/CHM5-D/CHM584Q.Seq.d/                       1011   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC124060|AC124060.3 Homo sapiens chromosome 8 clone RP11-65D13 map 8, WORKING DRAFT SEQUENCE.    50   4e-05  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   2e-04  11
AC139351|AC139351.4 Mus musculus BAC clone RP24-156K15 from 8, complete sequence.    56   8e-04  1
DE075571|DE075571.1 Oryzias latipes DNA, clone: ola1-178O04.F, genomic survey sequence.    54   0.003  1
DE078411|DE078411.1 Oryzias latipes DNA, clone: ola1-200D13.F, genomic survey sequence.    54   0.003  1
DE067405|DE067405.1 Oryzias latipes DNA, clone: ola1-164C24.R, genomic survey sequence.    54   0.003  1
DE057397|DE057397.1 Oryzias latipes DNA, clone: ola1-099G20.R, genomic survey sequence.    54   0.003  1
DE086252|DE086252.1 Oryzias latipes DNA, clone: ola1-188M19.F, genomic survey sequence.    54   0.003  1
DE283369|DE283369.1 Oryzias latipes DNA, clone: ola1-242I19.F, genomic survey sequence.    54   0.003  1
DE092915|DE092915.1 Oryzias latipes DNA, clone: ola1-209J09.R, genomic survey sequence.    54   0.003  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064723_1(BC064723|pid:none) Xenopus tropicalis hypothetical pr...    64   3e-09
AE013599_1507(AE013599|pid:none) Drosophila melanogaster chromos...    62   7e-09
(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A...    62   1e-08
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet...    62   1e-08
AB171620_1(AB171620|pid:none) Macaca fascicularis brain cDNA clo...    62   1e-08
BC076413_1(BC076413|pid:none) Danio rerio zgc:100980, mRNA (cDNA...    61   1e-08
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI...    61   2e-08
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho...    61   2e-08
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ...    61   2e-08
AK050531_1(AK050531|pid:none) Mus musculus adult pancreas islet ...    61   2e-08

 psg: 0.53  gvh: 0.34  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHP635 is nuc

>CHP635Z.Seq
NNNNNNNNNNACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGGTTCA
AAGTAANCCAAGGTACTGAACATCCAAATAGTACTGGTGCAACACCATCCTCANCAAATT
CAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAATCACCAAAAT
TGGGTGGTGATGGTATAGACTCTCAATCATCCACTCCAAATAAACAACAACTACCTCCAC
CACCACCACAACAAACAAAGAAAACCCAAATGGTATCTCATTTCATGCCAACTGATGAAT
GGTTACAAGATATTAAAAAACAATTACCATTAGATAATATCTTAAAAGTTATAACTCATT
TATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATCTGACGAACAAAAAATCATGG
ACTACTTGAAAATGTCAACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAATGACTC
GTCGTTATCATTCAAATGCTATTACAAAATGCTTGGTTCATTGCATACATGTGGTGTATC
ATNTTATTTAGAAA