>CHP634 (CHP634Q) /CSM/CH/CHP6-B/CHP634Q.Seq.d/
XXXXXXXXXXTAAATTTAGAAATCAATTCTTCCGTCAAATGACAAAATGTTTCCAAAGTG
AACACTTTCAAGTTGCTGAAAGAGCTCCCTATCTCTTTAGTAATGAAAATATAGTTTTAT
TAATAGCTTCAAAAAATAATTTCACTTTAGCTTTGGAAACTTTTTATAAACCATTACATG
AAAATTCAATTTCGCATTGGAATAGATCAATTAGAAATTTATCAATTAGTTCATTAAAAT
TATTTATGGAAATTGATATGGATTTATTTAATAAAATTAGTGAAAAATATAAAGAAAGTA
AAAAGAAACAACAACAAATACAACAACGTGAAAAATTCAAACAAAATGCGCCAGAAACTC
AAAAATCTAAACAAATTAACCAAAACAACAATAATAATAATAAATAATATCAACAACAAC
AACAACAACAATAATAATAATAATGGTTCAACCGAAACTAAAGCTGATAAACCATCAATG
ATAAGAAGAAAATCATTATTACCAGTTGATCCTTCAACGATCGCTGCTTTATCTTCTCAT
CGTTCACTTGAAGATATTATGTCAACAAATAGTAATAGCGGTAATGATGACGATGATGAA
AATAATCATACCAATCATGATTCTGAAATTGAAAATGAAGTTAAAGAAGATTTTAGGGTN
CCTGTAAATAATCGTTNACACCTTACCTGAAAG

---nleinssvk*qnvskvntfkllkelpislvmki*fy**lqkiisl*lwklfinhymk
iqfrigidqleiyqlvh*NYLWKLIWIYLIKLVKNIKKVKRNNNKYNNVKNSNKMRQKLK
NLNKLTKTTIIIINNINNNNNNNNNNNGSTETKADKPSMIRRKSLLPVDPSTIAALSSHR
SLEDIMSTNSNSGNDDDDENNHTNHDSEIENEVKEDFRVPVNNRXHLT*k

Frame A:
---kfrnqffrqmtkcfqsehfqvaerapylfsnenivlliasknnftlaletfykplhe
nsishwnrsirnlsisslklfmeidmdlfnkisekykeskkkqqqiqqrekfkqnapetq
kskqinqnnnnnnk*yqqqqqqq****wfnrn*s**tindkkkiiits*sfndrcfifss
ft*ryyvnk***r***r**k*syqs*f*n*k*s*rrf*gxck*sxtpylk


Frame B:
---nleinssvk*qnvskvntfkllkelpislvmki*fy**lqkiisl*lwklfinhymk
iqfrigidqleiyqlvh*NYLWKLIWIYLIKLVKNIKKVKRNNNKYNNVKNSNKMRQKLK
NLNKLTKTTIIIINNINNNNNNNNNNNGSTETKADKPSMIRRKSLLPVDPSTIAALSSHR
SLEDIMSTNSNSGNDDDDENNHTNHDSEIENEVKEDFRVPVNNRXHLT*k


Frame C:
---i*ksilpsndkmfpk*tlssc*ksslsl***kysfinsfkk*fhfsfgnfl*tit*k
fnfale*in*kfin*fikiiygn*ygfi**n**ki*rk*ketttnttt*kiqtkcarnsk
i*tn*pkqq****iisttttttiiiimvqpklklinhq**eenhyyqlilqrsllylliv
hlkilcqqiviavmmtmmkiiipimilklkmklkkilgxl*iivxtlpe

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP634 (CHP634Q) /CSM/CH/CHP6-B/CHP634Q.Seq.d/                        551   e-156
VHI443 (VHI443Q) /CSM/VH/VHI4-B/VHI443Q.Seq.d/                        543   e-153
CHS353 (CHS353Q) /CSM/CH/CHS3-C/CHS353Q.Seq.d/                        543   e-153
CHF893 (CHF893Q) /CSM/CH/CHF8-D/CHF893Q.Seq.d/                        543   e-153
AHQ619 (AHQ619Q) /CSM/AH/AHQ6-A/AHQ619Q.Seq.d/                        543   e-153
AHL419 (AHL419Q) /CSM/AH/AHL4-A/AHL419Q.Seq.d/                        543   e-153
CHG403 (CHG403Q) /CSM/CH/CHG4-A/CHG403Q.Seq.d/                        539   e-152
CHF184 (CHF184Q) /CSM/CH/CHF1-D/CHF184Q.Seq.d/                        537   e-152
AHH552 (AHH552Q) /CSM/AH/AHH5-C/AHH552Q.Seq.d/                        535   e-151
CHD808 (CHD808Q) /CSM/CH/CHD8-A/CHD808Q.Seq.d/                        529   e-149

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    34   6e-07  13
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          38   2e-06  18
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   4e-06  24
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   1e-05  14
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38   2e-05  13
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    32   2e-05  25
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   5e-05  10
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome.    34   2e-04  25
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32   2e-04  16
BA000017|BA000017.4 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome.    36   4e-04  28

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297_2532(AE014297|pid:none) Drosophila melanogaster chromos...    78   3e-13
AJ277140_1(AJ277140|pid:none) Drosophila melanogaster mRNA for r...    78   3e-13
AE014297_2533(AE014297|pid:none) Drosophila melanogaster chromos...    78   3e-13
AE014297_2537(AE014297|pid:none) Drosophila melanogaster chromos...    78   3e-13
AE014297_2531(AE014297|pid:none) Drosophila melanogaster chromos...    78   3e-13
AE014297_2535(AE014297|pid:none) Drosophila melanogaster chromos...    78   3e-13
AB209861_1(AB209861|pid:none) Homo sapiens mRNA for delta isofor...    77   4e-13
U38195_1(U38195|pid:none) Oryctolagus cuniculus protein phosphat...    77   4e-13
(Q14738) RecName: Full=Serine/threonine-protein phosphatase 2A 5...    77   4e-13
BX510320_4(BX510320|pid:none) Zebrafish DNA sequence from clone ...    77   4e-13

 psg: 0.83  gvh: 0.28  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.07
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for CHP634 is mit

>CHP634Z.Seq
NNNNNNNNNNTAAATTTAGAAATCAATTCTTCCGTCAAATGACAAAATGTTTCCAAAGTG
AACACTTTCAAGTTGCTGAAAGAGCTCCCTATCTCTTTAGTAATGAAAATATAGTTTTAT
TAATAGCTTCAAAAAATAATTTCACTTTAGCTTTGGAAACTTTTTATAAACCATTACATG
AAAATTCAATTTCGCATTGGAATAGATCAATTAGAAATTTATCAATTAGTTCATTAAAAT
TATTTATGGAAATTGATATGGATTTATTTAATAAAATTAGTGAAAAATATAAAGAAAGTA
AAAAGAAACAACAACAAATACAACAACGTGAAAAATTCAAACAAAATGCGCCAGAAACTC
AAAAATCTAAACAAATTAACCAAAACAACAATAATAATAATAAATAATATCAACAACAAC
AACAACAACAATAATAATAATAATGGTTCAACCGAAACTAAAGCTGATAAACCATCAATG
ATAAGAAGAAAATCATTATTACCAGTTGATCCTTCAACGATCGCTGCTTTATCTTCTCAT
CGTTCACTTGAAGATATTATGTCAACAAATAGTAATAGCGGTAATGATGACGATGATGAA
AATAATCATACCAATCATGATTCTGAAATTGAAAATGAAGTTAAAGAAGATTTTAGGGTN
CCTGTAAATAATCGTTNACACCTTACCTGAAAG