>CHP633 (CHP633Q) /CSM/CH/CHP6-B/CHP633Q.Seq.d/
CTGTTGGCCTATTGGNATCATCTTGTGTGCTTGGTCAAACAAAATAATAACTCACCAATA
ATAACCTTAAGAAATCATAATAATAACTAAATCAATAAAGTAATAATAATAACAATTTTA
AAAAAAAAATGGCTACACCATACATAGGTGCTAAAATAGTATTAATCTCAAAAAGTCTTG
TCAAATATGAAGGTATTCTCTATACAATTGACCCAAAAGATAATACCTTGTCTTTAAAAA
ATGTCAAATCTTTCGGAACTGAAGGAAGAAGACAAGGTACACAAATTCCACCATCAACAG
AAATTTTTGATTACATTGTATTCAAGAGTTCAGATATTAATGATCTCAATATATGTGATT
ATCCAACCACCCCAACAGATGACTCAAAATTAACAACACCAAAGCCAACCATCTCAACTA
GTACATCACCATCATCAACAACTAGCACTCCAAATTTAACAACACCAGGTGGTAAATCAA
CCTCAACTCCATCAAATGGAGTTGCAAACCAACCAACTCCAACTCAACCAACCCAACCAA
CCCTACCAACCCAACCACAACAACCAATTCAACCACAACAACCAACTCAACAATCAGTTC
AACCACCACCACCACAACAACCAACCCAACCAAATCCXXXXXXXXXX

vgllxsscvlgqtk**ltnnnlkks***lnq*SNNNNNFKKKMATPYIGAKIVLISKSLV
KYEGILYTIDPKDNTLSLKNVKSFGTEGRRQGTQIPPSTEIFDYIVFKSSDINDLNICDY
PTTPTDDSKLTTPKPTISTSTSPSSTTSTPNLTTPGGKSTSTPSNGVANQPTPTQPTQPT
LPTQPQQPIQPQQPTQQSVQPPPPQQPTQPN---

Frame A:
llaywxhlvclvkqnnnspiitlrnhnnn*inkviiitilkkkwlhht*vlk*y*sqkvl
snmkvfsiqltqkiipcl*kmsnlselkeedkvhkfhhqqkflitlysrvqilmisiyvi
iqppqqmtqn*qhqsqpsqlvhhhhqqlalqi*qhqvvnqpqlhqmelqtnqlqlnqpnq
pyqpnhnnqfnhnnqlnnqfnhhhhnnqpnqi---


Frame B:
cwpigiilcawsnkiithq**p*eiiiitksik****qf*kkngytihrc*nsinlkksc
qi*ryslyn*pkr*ylvfkkcqifrn*rkktrytnstinrnf*lhciqefry**sqym*l
snhpnr*lkinntkanhln*yitiinn*hskfnntrw*inlnsikwsckptnsnstnptn
ptnpttttnsttttnstisstttttttnptk---


Frame C:
vgllxsscvlgqtk**ltnnnlkks***lnq*SNNNNNFKKKMATPYIGAKIVLISKSLV
KYEGILYTIDPKDNTLSLKNVKSFGTEGRRQGTQIPPSTEIFDYIVFKSSDINDLNICDY
PTTPTDDSKLTTPKPTISTSTSPSSTTSTPNLTTPGGKSTSTPSNGVANQPTPTQPTQPT
LPTQPQQPIQPQQPTQQSVQPPPPQQPTQPN---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP633 (CHP633Q) /CSM/CH/CHP6-B/CHP633Q.Seq.d/                        749   0.0
AFA385 (AFA385Q) /CSM/AF/AFA3-D/AFA385Q.Seq.d/                        749   0.0
VHE405 (VHE405Q) /CSM/VH/VHE4-A/VHE405Q.Seq.d/                        676   0.0
SLH711 (SLH711Q) /CSM/SL/SLH7-A/SLH711Q.Seq.d/                        618   e-176
VHG618 (VHG618Q) /CSM/VH/VHG6-A/VHG618Q.Seq.d/                        278   1e-73
SSF485 (SSF485Q) /CSM/SS/SSF4-D/SSF485Q.Seq.d/                         42   0.010
AFE208 (AFE208Q) /CSM/AF/AFE2-A/AFE208Q.Seq.d/                         42   0.010
CHA836 (CHA836Q) /CSM/CH/CHA8-B/CHA836Q.Seq.d/                         40   0.041
CFC754 (CFC754Q) /CSM/CF/CFC7-C/CFC754Q.Seq.d/                         40   0.041
CFB570 (CFB570Q) /CSM/CF/CFB5-C/CFB570Q.Seq.d/                         40   0.041

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC006336|AC006336.4 Homo sapiens BAC clone RP11-508K5 from Y, complete sequence.    40   0.002  4
AC139192|AC139192.1 Pan troglodytes BAC clone RP43-44N16 from Y, complete sequence.    40   0.006  5
AC147673|AC147673.3 Pan troglodytes BAC clone CH251-13F15 from Y, complete sequence.    40   0.008  5
BS000627|BS000627.2 Pan troglodytes chromosome Y clone: PTB-087E03.    40   0.010  6
AC139194|AC139194.1 Pan troglodytes BAC clone RP43-164C2 from Y, complete sequence.    40   0.011  5
AC015331|AC015331.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    34   0.018  5
AY254473|AY254473.1 Dictyostelium discoideum nucleotide exchange factor RasGEF Q (gefQ) gene, complete cds.    36   0.043  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 ma...    34   0.051  10
AC140866|AC140866.1 Homo sapiens chromosome 5 clone RP11-1099C3, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.073  6
AB030033|AB030033.1 Dictyostelium discoideum gene for AmiB, complete cds.    32   0.075  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC080031_1(BC080031|pid:none) Xenopus laevis MGC82934 protein, m...    99   1e-19
AB257699_1(AB257699|pid:none) Xenopus laevis mRNA for RAP55 prot...    99   1e-19
BC067936_1(BC067936|pid:none) Xenopus tropicalis LSM14A, SCD6 ho...    98   2e-19
AK027643_1(AK027643|pid:none) Homo sapiens cDNA FLJ14737 fis, cl...    98   2e-19
(Q5R4R4) RecName: Full=Protein LSM14 homolog A; AltName: Full=Pr...    98   2e-19
BC042251_1(BC042251|pid:none) Xenopus laevis hypothetical protei...    98   2e-19
(Q8K2F8) RecName: Full=Protein LSM14 homolog A; AltName: Full=Pr...    98   2e-19
BC047185_1(BC047185|pid:none) Danio rerio zgc:77202, mRNA (cDNA ...    98   2e-19
(Q3MHF8) RecName: Full=Protein LSM14 homolog A; AltName: Full=Pr...    98   2e-19
BC166537_1(BC166537|pid:none) Rattus norvegicus LSM14 homolog A ...    98   2e-19

 psg: 0.87  gvh: 0.40  alm: 0.42  top: 0.73  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHP633 is cyt

>CHP633F.Seq
CTGTTGGCCTATTGGNATCATCTTGTGTGCTTGGTCAAACAAAATAATAACTCACCAATA
ATAACCTTAAGAAATCATAATAATAACTAAATCAATAAAGTAATAATAATAACAATTTTA
AAAAAAAAATGGCTACACCATACATAGGTGCTAAAATAGTATTAATCTCAAAAAGTCTTG
TCAAATATGAAGGTATTCTCTATACAATTGACCCAAAAGATAATACCTTGTCTTTAAAAA
ATGTCAAATCTTTCGGAACTGAAGGAAGAAGACAAGGTACACAAATTCCACCATCAACAG
AAATTTTTGATTACATTGTATTCAAGAGTTCAGATATTAATGATCTCAATATATGTGATT
ATCCAACCACCCCAACAGATGACTCAAAATTAACAACACCAAAGCCAACCATCTCAACTA
GTACATCACCATCATCAACAACTAGCACTCCAAATTTAACAACACCAGGTGGTAAATCAA
CCTCAACTCCATCAAATGGAGTTGCAAACCAACCAACTCCAACTCAACCAACCCAACCAA
CCCTACCAACCCAACCACAACAACCAATTCAACCACAACAACCAACTCAACAATCAGTTC
AACCACCACCACCACAACAACCAACCCAACCAAATCCNNNNNNNNNN