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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP632
Library CH
(Link to library)
Clone ID CHP632
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHP632P
(Link to Original site)
Representative DNA sequence 
>CHP632 (CHP632Q) /CSM/CH/CHP6-B/CHP632Q.Seq.d/
CTGTTGGCCTACTGGNAAAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAAC
AATAATAAGGAATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAA
ATTACGTATACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAA
TAATAAAAAAAAAAXXXXXXXXXXCAAGNTGTTCCCCNTCTTCATNTGCNTCATCAAGNT
GTTCCCCNTCTTCNTNTGCNTCATCAAGNTGTGCCCCATCTTCATCTGCNTCATCAAGTT
NTGNTCCATCTTCATNTGCATCATCTTCATNGTGCATCATCTTCATNTGCATCATTTGCA
GCAANTACAGCTGCAACTACGATTGCAANTACAGCTGCAACTACAACTGCAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgkkifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*IN
NKKK---

---QXVPXLHXXHQXVPXLXXXHQXVPHLHLXHQVXXHLHXHHLHXASSSXASFAAXTAA
TTIAXTAATTTAT
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxkniqlsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink
**kk---

---QXVPXLHXXHQXVPXLXXXHQXVPHLHLXHQVXXHLHXHHLHXASSSXASFAAXTAA
TTIAXTAATTTAT

Frame B:
cwptgkkifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*IN
NKKK---

---kxfpxfxcxikxfpxfxcxikxcpificxikxxsifxciifxvhhlhxhhlqqxqlq
lrlqxqlqlqlq

Frame C:
vgllxkkystq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*i
ikkk---

---xcspssxassxcspssxassxcapsssasssxxpssxasssxciifxciicsxyscn
ydcxyscnyncn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP632 (CHP632Q) /CSM/CH/CHP6-B/CHP632Q.Seq.d/                        309   2e-83
CHE505 (CHE505Q) /CSM/CH/CHE5-A/CHE505Q.Seq.d/                        266   2e-70
CHP334 (CHP334Q) /CSM/CH/CHP3-B/CHP334Q.Seq.d/                        264   1e-69
CHO738 (CHO738Q) /CSM/CH/CHO7-B/CHO738Q.Seq.d/                        262   4e-69
CHO812 (CHO812Q) /CSM/CH/CHO8-A/CHO812Q.Seq.d/                        260   1e-68
CHO191 (CHO191Q) /CSM/CH/CHO1-D/CHO191Q.Seq.d/                        260   1e-68
CHH157 (CHH157Q) /CSM/CH/CHH1-C/CHH157Q.Seq.d/                        260   1e-68
CHR134 (CHR134Q) /CSM/CH/CHR1-B/CHR134Q.Seq.d/                        256   2e-67
CHO275 (CHO275Q) /CSM/CH/CHO2-D/CHO275Q.Seq.d/                        254   9e-67
CHN484 (CHN484Q) /CSM/CH/CHN4-D/CHN484Q.Seq.d/                        254   9e-67
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   135   1e-60  3
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.   135   1e-60  4
AL160035|AL160035.19 Human DNA sequence from clone RP11-545M8 on chromosome 13.    42   8.4    1
dna update 2003. 4.24
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 132,456,697
protein update 2009. 4.11
PSORT 

 psg: 0.75  gvh: 0.58  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic

>> prediction for CHP632 is mit
5' end seq. ID CHP632F
5' end seq. 
>CHP632F.Seq
CTGTTGGCCTACTGGNAAAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAAC
AATAATAAGGAATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAA
ATTACGTATACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAA
TAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 204
3' end seq. ID CHP632Z
3' end seq. 
>CHP632Z.Seq
NNNNNNNNNNCAAGNTGTTCCCCNTCTTCATNTGCNTCATCAAGNTGTTCCCCNTCTTCN
TNTGCNTCATCAAGNTGTGCCCCATCTTCATCTGCNTCATCAAGTTNTGNTCCATCTTCA
TNTGCATCATCTTCATNGTGCATCATCTTCATNTGCATCATTTGCAGCAANTACAGCTGC
AACTACGATTGCAANTACAGCTGCAACTACAACTGCAACT
Length of 3' end seq. 220
Connected seq. ID CHP632P
Connected seq. 
>CHP632P.Seq
CTGTTGGCCTACTGGNAAAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAAC
AATAATAAGGAATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAA
ATTACGTATACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAA
TAATAAAAAAAAAA----------CAAGNTGTTCCCCNTCTTCATNTGCNTCATCAAGNT
GTTCCCCNTCTTCNTNTGCNTCATCAAGNTGTGCCCCATCTTCATCTGCNTCATCAAGTT
NTGNTCCATCTTCATNTGCATCATCTTCATNGTGCATCATCTTCATNTGCATCATTTGCA
GCAANTACAGCTGCAACTACGATTGCAANTACAGCTGCAACTACAACTGCAACT
Length of connected seq. 404
Full length Seq ID -
Full length Seq. -
Length of full length seq. -