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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP612
Library CH
(Link to library)
Clone ID CHP612
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14298-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHP612 (CHP612Q) /CSM/CH/CHP6-A/CHP612Q.Seq.d/
CTGTTGGCCTACTGGTATTATGGATCAAGNATAATATGGTATGAAAGAGTACAAAAATCA
ATATTTGGTCTATCAAATTTATTTAGTGGTTTATTTGGTGCAATCATTGAAGCAAAATTA
TTATGTCCACGTGTTACATCAACTTCTGGTTTAATTGGAGTTGATAATATCCCAAATTTA
ATTGGTGGTGCTTTATTAGGTGGCGGATCTTCAGGTTTGTTAGGTGGTTTATTAGGTGGA
GGTAGTGGTGGTTTTAAAACTCAAACCCCTGTACCTACCCAACCAAATGGTGGTGGTACT
GGTTTCATTGGTGGTTTCATAAGTGGTGGAAGTACAAATGGTGGTGTAACACCATCTTTA
ACTCCAACTCCAACATCGAAACCATCAAGTGGTTTTTTAGGTGGATTTATAGGTGGTGGT
GGATCAACACCAACACCCGCACAAACACTTTCATCAACTCCAACCCCAACCTCAACTCCA
ACCCCAAATCCAACTCAAAAACCAGTATCTAGTTTCTTGGGTGGNTTATTTGGTGGTTCA
ACAACTGGTACAACACAACCTATTCAAACACCTTCACCAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
LLAYWYYGSXIIWYERVQKSIFGLSNLFSGLFGAIIEAKLLCPRVTSTSGLIGVDNIPNL
IGGALLGGGSSGLLGGLLGGGSGGFKTQTPVPTQPNGGGTGFIGGFISGGSTNGGVTPSL
TPTPTSKPSSGFLGGFIGGGGSTPTPAQTLSSTPTPTSTPTPNPTQKPVSSFLGGLFGGS
TTGTTQPIQTPS---
Translated Amino Acid sequence (All Frames) 
Frame A:
LLAYWYYGSXIIWYERVQKSIFGLSNLFSGLFGAIIEAKLLCPRVTSTSGLIGVDNIPNL
IGGALLGGGSSGLLGGLLGGGSGGFKTQTPVPTQPNGGGTGFIGGFISGGSTNGGVTPSL
TPTPTSKPSSGFLGGFIGGGGSTPTPAQTLSSTPTPTSTPTPNPTQKPVSSFLGGLFGGS
TTGTTQPIQTPS---


Frame B:
cwptgimdqx*ygmkeyknqylvyqiylvvylvqslkqnyyvhvlhqllv*leliisqi*
lvvly*vadlqvc*vvy*vevvvvlklkplylpnqmvvvlvslvvs*vvevqmvv*hhl*
lqlqhrnhqvvf*vdl*vvvdqhqhphkhfhqlqpqpqlqpqiqlknqylvswvxylvvq
qlvqhnlfkhlh---


Frame C:
vgllvlwikxnmv*kstkiniwsikfi*wfiwcnh*skiimstcyinfwfnws**ypkfn
wwcfirwrifrfvrwfirwr*wwf*nsnpctyptkwwwywfhwwfhkwwkykwwcntifn
snsnietikwffrwiyrwwwintntrtntfinsnpnlnsnpksnsktsi*flgwxiwwfn
nwynttysntft---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP612 (CHP612Q) /CSM/CH/CHP6-A/CHP612Q.Seq.d/                       1136   0.0
CHF360 (CHF360Q) /CSM/CH/CHF3-C/CHF360Q.Seq.d/                        398   e-110
SSJ890 (SSJ890Q) /CSM/SS/SSJ8-D/SSJ890Q.Seq.d/                         56   6e-07
SSJ774 (SSJ774Q) /CSM/SS/SSJ7-D/SSJ774Q.Seq.d/                         56   6e-07
SSH736 (SSH736Q) /CSM/SS/SSH7-B/SSH736Q.Seq.d/                         56   6e-07
SSG531 (SSG531Q) /CSM/SS/SSG5-B/SSG531Q.Seq.d/                         56   6e-07
SSD421 (SSD421Q) /CSM/SS/SSD4-A/SSD421Q.Seq.d/                         56   6e-07
SSC641 (SSC641Q) /CSM/SS/SSC6-B/SSC641Q.Seq.d/                         56   6e-07
SSB626 (SSB626Q) /CSM/SS/SSB6-B/SSB626Q.Seq.d/                         56   6e-07
SHB670 (SHB670Q) /CSM/SH/SHB6-C/SHB670Q.Seq.d/                         56   6e-07
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1055   0.0    10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    38   0.002  7
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   0.006  11
M11624|M11624.1 T.thermophila (type B) tandem repeat 'ccccaa' region, clone p17D59.    52   0.013  1
CS124597|CS124597.1 Sequence 283 from Patent WO2005059172.         52   0.013  1
CS124719|CS124719.1 Sequence 405 from Patent WO2005059172.         52   0.013  3
AC098026|AC098026.7 Rattus norvegicus clone CH230-93E23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    50   0.050  1
CN746532|CN746532.1 SAL_US033xa15f1.ab1 SAL_US N.Bentheme Nicotiana benthamiana cDNA 5', mRNA sequence.    50   0.050  1
M11626|M11626.1 T.thermophila (type B) tandem repeat 'ccccaa' region, clone p17D63.    50   0.050  1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32   0.057  10
dna update 2005.10. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_70(AC116986|pid:none) Dictyostelium discoideum chromoso...   106   4e-22
protein update 2008.11. 7
PSORT 

 psg: 0.84  gvh: 0.66  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHP612 is cyt
5' end seq. ID CHP612F
5' end seq. 
>CHP612F.Seq
CTGTTGGCCTACTGGTATTATGGATCAAGNATAATATGGTATGAAAGAGTACAAAAATCA
ATATTTGGTCTATCAAATTTATTTAGTGGTTTATTTGGTGCAATCATTGAAGCAAAATTA
TTATGTCCACGTGTTACATCAACTTCTGGTTTAATTGGAGTTGATAATATCCCAAATTTA
ATTGGTGGTGCTTTATTAGGTGGCGGATCTTCAGGTTTGTTAGGTGGTTTATTAGGTGGA
GGTAGTGGTGGTTTTAAAACTCAAACCCCTGTACCTACCCAACCAAATGGTGGTGGTACT
GGTTTCATTGGTGGTTTCATAAGTGGTGGAAGTACAAATGGTGGTGTAACACCATCTTTA
ACTCCAACTCCAACATCGAAACCATCAAGTGGTTTTTTAGGTGGATTTATAGGTGGTGGT
GGATCAACACCAACACCCGCACAAACACTTTCATCAACTCCAACCCCAACCTCAACTCCA
ACCCCAAATCCAACTCAAAAACCAGTATCTAGTTTCTTGGGTGGNTTATTTGGTGGTTCA
ACAACTGGTACAACACAACCTATTCAAACACCTTCACCANNNNNNNNNN
Length of 5' end seq. 589
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -