CHP575
Library CH
(Link to library)
Clone ID CHP575
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15689-1|Contig-U16524-1
Original site URL
Representative seq. ID CHP575P
(Link to Original site)
Representative DNA sequence
>CHP575 (CHP575Q) /CSM/CH/CHP5-D/CHP575Q.Seq.d/
CTGTTGGCCTACTGGNATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAA
GAGGATCATCTCCTCAAGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTG
ATGCCTCACACTTTACTTATAGAAATTATATGGAAGATGATAAAATTAATTCATTTACAT
TTAATATGGCAAGAAAAGATCAAACTCAACTCTTTCAAAGAATTATTTTAACAAATGAGA
GTGAAAGCAAGATTGAAGAGTATGCAGAAGTAGCAGAACAATTATTAGATGCAATTAATC
TTAGGGAAAAATATGTTTTCCATCCAAAGATTTGGAAAGCCGATGCACCAGTCGGAGAAA
AGCCACCCTATTCACCATTCGAATCCGATGAAAGTACCAATTGTGCCACAGAGCATATGT
TTAAAGAGGTTAATGGTGTTTATTTCGTGTATTCCAATGAAACCGATATGAAATCCAATA
AAGCACTCTTTAGTGTACCACATACATTGGCATCCTATTATAAGGACATTAACAATTTGA
TGATGTTAAGTAGTTATGGTCCAXXXXXXXXXXAATTAAATGGTGNTAATAAATTAAGNA
ATTCTTCAGNTGGTTCNNCTCCTAATAATGGTACTCCTTCTAGTTGTGGTACTCCATCAT
TAAGTAGTCNTGGTGNTGTTGTTCATTTAATGAAAACTAAACCTNATATTCCACCACCTC
NATCTTTAAATATTAAACAAGAAAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATACTAATACTAATCACAAATAGTAATAGTACTACTACTANN
CAAG
sequence update 2002.10.25
Translated Amino Acid sequence
vgllx**YNNNNNIMSTPLRGSSPQVSFYESELDQEGGSDASHFTYRNYMEDDKINSFTF
NMARKDQTQLFQRIILTNESESKIEEYAEVAEQLLDAINLREKYVFHPKIWKADAPVGEK
PPYSPFESDESTNCATEHMFKEVNGVYFVYSNETDMKSNKALFSVPHTLASYYKDINNLM
MLSSYGP---

---LNGXNKLXNSSXGSXPNNGTPSSCGTPSLSSXGXVVHLMKTKPXIPPPXSLNIKQEN
NNNNNNNNNNNNNNNNNNTNTNHK***yyyxx


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxnntttttt*cqhl*edhllkfhfmnlnlikkeavmphtllieiiwkmiklihlh
liwqekiklnsfkelf*qmrvkarlksmqk*qnny*mqlilgknmfsiqrfgkpmhqsek
shpihhsnpmkvpivpqsiclkrlmvfiscipmkpi*npikhslvyhihwhpiirtlti*
*c*vvmv---

---n*mvxin*xilqxvxllimvlllvvvlhh*vvxvxlfi**klnlifhhlxl*ilnkk
iiiiiiiiiiiiiiiiiiililitnsnstttxq

Frame B:
cwptgiiiqqqqqhnvntfkriisssfil*i*t*srrrq*cltlyl*klygr**n*fiyi
*ygkkrsnstlsknyfnk*e*kqd*rvcrssrtiircn*s*gkicfpskdlesrctsrrk
atlftirir*kyqlchrayv*rg*wclfrvfq*nryeiq*stl*cttyigill*gh*qfd
dvk*lws---

---ikwx**ikxffxwfxs**wysf*lwysiik*swxccsfnen*txysttsifky*trk
******************y*y*sqivivlllxk

Frame C:
vgllx**YNNNNNIMSTPLRGSSPQVSFYESELDQEGGSDASHFTYRNYMEDDKINSFTF
NMARKDQTQLFQRIILTNESESKIEEYAEVAEQLLDAINLREKYVFHPKIWKADAPVGEK
PPYSPFESDESTNCATEHMFKEVNGVYFVYSNETDMKSNKALFSVPHTLASYYKDINNLM
MLSSYGP---

---LNGXNKLXNSSXGSXPNNGTPSSCGTPSLSSXGXVVHLMKTKPXIPPPXSLNIKQEN
NNNNNNNNNNNNNNNNNNTNTNHK***yyyxx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHP575 (CHP575Q) /CSM/CH/CHP5-D/CHP575Q.Seq.d/ 1277 0.0
SHK438 (SHK438Q) /CSM/SH/SHK4-B/SHK438Q.Seq.d/ 1017 0.0
CHR607 (CHR607Q) /CSM/CH/CHR6-A/CHR607Q.Seq.d/ 1017 0.0
CHQ809 (CHQ809Q) /CSM/CH/CHQ8-A/CHQ809Q.Seq.d/ 1017 0.0
CHP312 (CHP312Q) /CSM/CH/CHP3-A/CHP312Q.Seq.d/ 1017 0.0
CHO809 (CHO809Q) /CSM/CH/CHO8-A/CHO809Q.Seq.d/ 1017 0.0
CHO312 (CHO312Q) /CSM/CH/CHO3-A/CHO312Q.Seq.d/ 1017 0.0
CHO192 (CHO192Q) /CSM/CH/CHO1-D/CHO192Q.Seq.d/ 1017 0.0
CHN690 (CHN690Q) /CSM/CH/CHN6-D/CHN690Q.Seq.d/ 1017 0.0
CHJ359 (CHJ359Q) /CSM/CH/CHJ3-C/CHJ359Q.Seq.d/ 1017 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF238311|AF238311.1 Dictyostelium discoideum AMP deaminase (amdA) gene, complete cds. 787 0.0 3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 32 0.020 13
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 34 0.068 8
AC132363|AC132363.3 Mus musculus BAC clone RP23-455N1 from 1, complete sequence. 42 0.12 7
AC092917|AC092917.1 Homo sapiens chromosome 12q clone RP11-288J4, WORKING DRAFT SEQUENCE, 14 unordered pieces. 44 0.16 7
BX294189|BX294189.11 Zebrafish DNA sequence from clone CH211-218D20 in linkage group 9. 46 0.17 7
CF880307|CF880307.1 tric081xh12.b2 T.reesei mycelial culture, Version 6 October 2003 Hypocrea jecorina cDNA clone tric081xh12, mRNA sequence. 48 0.29 1
AC152622|AC152622.3 Bos taurus clone CH240-13B16, *** SEQUENCING IN PROGRESS ***, 43 unordered pieces. 32 0.58 2
AP002541|AP002541.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10. 32 0.60 2
AP002868|AP002868.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04. 32 0.60 2
dna update 2005.10. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54DD0) RecName: Full=AMP deaminase; EC=3.5.4.6; 353 5e-96
CU633899_477(CU633899|pid:none) Podospora anserina genomic DNA c... 39 0.20
T50996(T50996)probable AMP deaminase [imported] - Neurospora cra... 38 0.35
BX005395_7(BX005395|pid:none) Zebrafish DNA sequence from clone ... 37 0.59
AM482591_3(AM482591|pid:none) Vitis vinifera contig VV78X210526.... 37 0.77
AK301507_1(AK301507|pid:none) Homo sapiens cDNA FLJ51124 complet... 37 1.0
CR382131_473(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 37 1.0
AK289998_1(AK289998|pid:none) Homo sapiens cDNA FLJ76195 complet... 37 1.0
(O08739) RecName: Full=AMP deaminase 3; EC=3.5.4.6; Alt... 36 1.3
D88994_1(D88994|pid:none) Mus musculus Ampd3 gene, complete cds. 36 1.3
protein update 2009. 4.11
PSORT

psg: 0.77 gvh: 0.41 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: mitochondrial
24.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for CHP575 is cyt

5' end seq. ID CHP575F
5' end seq.
>CHP575F.Seq
CTGTTGGCCTACTGGNATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAA
GAGGATCATCTCCTCAAGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTG
ATGCCTCACACTTTACTTATAGAAATTATATGGAAGATGATAAAATTAATTCATTTACAT
TTAATATGGCAAGAAAAGATCAAACTCAACTCTTTCAAAGAATTATTTTAACAAATGAGA
GTGAAAGCAAGATTGAAGAGTATGCAGAAGTAGCAGAACAATTATTAGATGCAATTAATC
TTAGGGAAAAATATGTTTTCCATCCAAAGATTTGGAAAGCCGATGCACCAGTCGGAGAAA
AGCCACCCTATTCACCATTCGAATCCGATGAAAGTACCAATTGTGCCACAGAGCATATGT
TTAAAGAGGTTAATGGTGTTTATTTCGTGTATTCCAATGAAACCGATATGAAATCCAATA
AAGCACTCTTTAGTGTACCACATACATTGGCATCCTATTATAAGGACATTAACAATTTGA
TGATGTTAAGTAGTTATGGTCCANNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID CHP575Z
3' end seq.
>CHP575Z.Seq
NNNNNNNNNNAATTAAATGGTGNTAATAAATTAAGNAATTCTTCAGNTGGTTCNNCTCCT
AATAATGGTACTCCTTCTAGTTGTGGTACTCCATCATTAAGTAGTCNTGGTGNTGTTGTT
CATTTAATGAAAACTAAACCTNATATTCCACCACCTCNATCTTTAAATATTAAACAAGAA
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACT
AATACTAATCACAAATAGTAATAGTACTACTACTANNCAAG
Length of 3' end seq. 281
Connected seq. ID CHP575P
Connected seq.
>CHP575P.Seq
CTGTTGGCCTACTGGNATAATAATACAACAACAACAACAACATAATGTCAACACCTTTAA
GAGGATCATCTCCTCAAGTTTCATTTTATGAATCTGAACTTGATCAAGAAGGAGGCAGTG
ATGCCTCACACTTTACTTATAGAAATTATATGGAAGATGATAAAATTAATTCATTTACAT
TTAATATGGCAAGAAAAGATCAAACTCAACTCTTTCAAAGAATTATTTTAACAAATGAGA
GTGAAAGCAAGATTGAAGAGTATGCAGAAGTAGCAGAACAATTATTAGATGCAATTAATC
TTAGGGAAAAATATGTTTTCCATCCAAAGATTTGGAAAGCCGATGCACCAGTCGGAGAAA
AGCCACCCTATTCACCATTCGAATCCGATGAAAGTACCAATTGTGCCACAGAGCATATGT
TTAAAGAGGTTAATGGTGTTTATTTCGTGTATTCCAATGAAACCGATATGAAATCCAATA
AAGCACTCTTTAGTGTACCACATACATTGGCATCCTATTATAAGGACATTAACAATTTGA
TGATGTTAAGTAGTTATGGTCCA----------AATTAAATGGTGNTAATAAATTAAGNA
ATTCTTCAGNTGGTTCNNCTCCTAATAATGGTACTCCTTCTAGTTGTGGTACTCCATCAT
TAAGTAGTCNTGGTGNTGTTGTTCATTTAATGAAAACTAAACCTNATATTCCACCACCTC
NATCTTTAAATATTAAACAAGAAAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATACTAATACTAATCACAAATAGTAATAGTACTACTACTANN
CAAG
Length of connected seq. 834
Full length Seq ID -
Full length Seq. -
Length of full length seq. -