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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP553
Library CH
(Link to library)
Clone ID CHP553
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID CHP553P
(Link to Original site)
Representative DNA sequence 
>CHP553 (CHP553Q) /CSM/CH/CHP5-C/CHP553Q.Seq.d/
ACTGTTGGCCTACTGGNAATTTTAGAATATTTAAAAAATATTCATATAATAATAAATAAA
AATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTT
TGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAACAACAGCAAC
TGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAACCACAACTAC
AGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGGAGCATCAAC
ATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCCAACTGCAAC
ACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATCATCATCATC
TGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGCAACTGATGT
TTTTGATAGTATGAGTAATTCTGGTAATTNCCXXXXXXXXXXGNATTTTTTNTTCCTTCA
TGNTCAATNTTATAATAATCCNAATCCNAGTATTGACTNTAGTGAAGNTGCAAACTCTTT
CTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGG
TTTATCNCCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCC
NTTCTNTGATNTTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCNCTTTCCAAACTCA
AGNACAAGATCNCCAAGGTGTTTTCTTTATTGGTGATATTTCTGCTGGTAATTTTGNACC
CCCATATAAAGTACTAGAGGATGGTTCNAACGCTTTCAAATTATTATCAAATATTTATTT
ATTATTATTAATTTTTATAANTTTCCTTATTATTTATNCTAAACNAAAAAAAAACAAATA
AAGAAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywxf*ni*kifi***IKMKEYKKIILYSFLVFLILCFAKPSLSDDPLTTSTTTTTAT
ALPTTSAASTAKVTTTTTTTGSPASTTTTGAPTSTTGASTSTTGAPSSSSSSNETTPTAT
PTKKPVTPTPSSTSSSSSSSEVTSSSSESSAGEHPCATDVFDSMSNSGNX---

---XFXFLHXQXYNNPNPSIDXSEXANSFFLDXQICITVQVVGNLPCVGLSPYLGGQVPN
AVWVELLIPFXDXQVYPNAXISSIXFQTQXQDXQGVFFIGDISAGNFXPPYKVLEDGSNA
FKLLSNIYLLLLIFIXFLIIYXKXKKNK*rkn
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxileylknihiiinkneri*knyii*ffsffnfmfcktisfr*pfnnfnnnnnsn
cttndigsinskgnnnnhnyritsinhnyrstninyrsininyrstiiiifie*nnsncn
tn*ktcntntiiniiiiiii*sniiliriisw*tsmcn*cf**ye*fw*x---

---xffxpsxsxl**sxsxy*l**xcklflfrxsnlyyrssgw*ftlcwfixilgwsssk
csmg*tfnsxl*xsslskcxyq*yxfpnsxtrsprcflyw*yfcw*fxtpi*strgwfxr
fqiiikylfiiinfyxfpyylx*tkkkqikkk

Frame B:
llaywxf*ni*kifi***IKMKEYKKIILYSFLVFLILCFAKPSLSDDPLTTSTTTTTAT
ALPTTSAASTAKVTTTTTTTGSPASTTTTGAPTSTTGASTSTTGAPSSSSSSNETTPTAT
PTKKPVTPTPSSTSSSSSSSEVTSSSSESSAGEHPCATDVFDSMSNSGNX---

---XFXFLHXQXYNNPNPSIDXSEXANSFFLDXQICITVQVVGNLPCVGLSPYLGGQVPN
AVWVELLIPFXDXQVYPNAXISSIXFQTQXQDXQGVFFIGDISAGNFXPPYKVLEDGSNA
FKLLSNIYLLLLIFIXFLIIYXKXKKNK*rkn

Frame C:
cwptgnfrifkkysynnk*k*knikklyyivf*ff*fyvlqnhlfqmtl*qlqqqqqqql
hyqrhrqhqqqr*qqqpqlqdhqhqpqlqehqhqlqehqhqlqehhhhhlhrmkqlqlqh
qlknl*hqhhhqhhhhhhhlk*hhphpnhqlvnihvqlmfliv*vilvix---

---ifxsfmxnxiiixixvltxvkxqtlsf*xfkfvlpfkwlviylvlvyxhtwvvkfqm
qyglnf*fxsxxfkfiqmllsvvslsklkxkixkvfsllvifllvilxphiky*rmvxtl
snyyqifiyyy*fl*xsllfxlnxkktnkek
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP553 (CHP553Q) /CSM/CH/CHP5-C/CHP553Q.Seq.d/                        577   e-163
SSJ359 (SSJ359Q) /CSM/SS/SSJ3-C/SSJ359Q.Seq.d/                        569   e-161
SSI756 (SSI756Q) /CSM/SS/SSI7-C/SSI756Q.Seq.d/                        569   e-161
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                        569   e-161
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/                        569   e-161
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/                        565   e-160
SSC357 (SSC357Q) /CSM/SS/SSC3-C/SSC357Q.Seq.d/                        563   e-159
CHL891 (CHL891Q) /CSM/CH/CHL8-D/CHL891Q.Seq.d/                        563   e-159
CHP101 (CHP101Q) /CSM/CH/CHP1-A/CHP101Q.Seq.d/                        559   e-158
AHE556 (AHE556Q) /CSM/AH/AHE5-C/AHE556Q.Seq.d/                        557   e-157
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   3e-06  11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44   4e-05  9
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    44   9e-05  8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   0.001  9
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    44   0.002  8
AC126867|AC126867.4 Rattus norvegicus clone CH230-49B18, WORKING DRAFT SEQUENCE, 1 ordered piece.    54   0.003  4
AC095285|AC095285.5 Rattus norvegicus clone CH230-11A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    54   0.003  4
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40   0.004  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   0.004  6
BP663205|BP663205.1 Arabidopsis thaliana cDNA clone:RAFL21-47-C10, 3' end.    38   0.011  2
dna update 2005.10. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 700,826,516
protein update 2009. 4.11
PSORT 

 psg: 1.00  gvh: 0.82  alm: 0.19  top: 0.20  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.62  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CHP553 is pla
5' end seq. ID CHP553F
5' end seq. 
>CHP553F.Seq
ACTGTTGGCCTACTGGNAATTTTAGAATATTTAAAAAATATTCATATAATAATAAATAAA
AATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTT
TGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAACAACAGCAAC
TGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAACCACAACTAC
AGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGGAGCATCAAC
ATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCCAACTGCAAC
ACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATCATCATCATC
TGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGCAACTGATGT
TTTTGATAGTATGAGTAATTCTGGTAATTNCCNNNNNNNNNN
Length of 5' end seq. 522
3' end seq. ID CHP553Z
3' end seq. 
>CHP553Z.Seq
NNNNNNNNNNGNATTTTTTNTTCCTTCATGNTCAATNTTATAATAATCCNAATCCNAGTA
TTGACTNTAGTGAAGNTGCAAACTCTTTCTTTTTAGATNTTCAAATTTGTATTACCGTTC
AAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCCATACTTGGGTGGTCAAGTTCCAA
ATGCAGTATGGGTTGAACTTTTAATTCCNTTCTNTGATNTTCAAGTTTATCCAAATGCTN
TTATCAGTAGTATCNCTTTCCAAACTCAAGNACAAGATCNCCAAGGTGTTTTCTTTATTG
GTGATATTTCTGCTGGTAATTTTGNACCCCCATATAAAGTACTAGAGGATGGTTCNAACG
CTTTCAAATTATTATCAAATATTTATTTATTATTATTAATTTTTATAANTTTCCTTATTA
TTTATNCTAAACNAAAAAAAAACAAATAAAGAAAAAAC
Length of 3' end seq. 458
Connected seq. ID CHP553P
Connected seq. 
>CHP553P.Seq
ACTGTTGGCCTACTGGNAATTTTAGAATATTTAAAAAATATTCATATAATAATAAATAAA
AATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTT
TGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAACAACAGCAAC
TGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAACCACAACTAC
AGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAGGAGCATCAAC
ATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTCCAACTGCAAC
ACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCATCATCATCATC
TGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTGCAACTGATGT
TTTTGATAGTATGAGTAATTCTGGTAATTNCC----------GNATTTTTTNTTCCTTCA
TGNTCAATNTTATAATAATCCNAATCCNAGTATTGACTNTAGTGAAGNTGCAAACTCTTT
CTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGG
TTTATCNCCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCC
NTTCTNTGATNTTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCNCTTTCCAAACTCA
AGNACAAGATCNCCAAGGTGTTTTCTTTATTGGTGATATTTCTGCTGGTAATTTTGNACC
CCCATATAAAGTACTAGAGGATGGTTCNAACGCTTTCAAATTATTATCAAATATTTATTT
ATTATTATTAATTTTTATAANTTTCCTTATTATTTATNCTAAACNAAAAAAAAACAAATA
AAGAAAAAAC
Length of connected seq. 960
Full length Seq ID -
Full length Seq. -
Length of full length seq. -