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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP538
Library CH
(Link to library)
Clone ID CHP538
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11908-1
Original site URL
Representative seq. ID CHP538P
(Link to Original site)
Representative DNA sequence 
>CHP538 (CHP538Q) /CSM/CH/CHP5-B/CHP538Q.Seq.d/
CTGTTGGCCTACTGGNATCATCACCTGTAACAAAATCAATACCATTGTCATCAATTGGTT
CATCATCAACTTCACCAATAATATCACCATCATCGTCATCATCATCATCACCAATTGTTG
GAACAAATTTAACAACAGGTTCAATTCATTCAACTTCACCAACACCATTTTCATTATTAG
CAACAACGACATCAACAACAACAACGAATAGTAATAAAGTTAATTCAATTATAAATTCAA
CATCACAATCAAAATCACAACTTTTACCAATTCATCCATCACTTTTAGATACGAATCAAA
TGATTGAAAGAGTTGAAGGTAATCCATTATCACAAATGAAGAGAAAAGATTTTAGTATAA
CTCATCATTTATCAACTAAATTACAAAAAACAAAACATTTTAGAAAGGAAGAGATTTGGG
ATTGTTTTTTAATATTAAAAGTTAGTGGTAATTTAGTAAATGTAAAAAATTCAACAACAA
CAACAACAACATCAACATCAACATCAACATCAACATCAACATCAACATCAACATCATCAA
CAACTACAAATCAACCAAATTCAATAACACAATCAAATAGTGCAAGTAATAATAGTTTAA
TTAATAATGGAAAAATTAAAAAATCAACAXXXXXXXXXXTCAAGGATAGACATAATGAAA
GAATTCGTTTATATTGTAAACAAATGTTGGATTATATCGTTGATCAAACTTTTGTTGAAA
TTGCCAAAGCCGAGCTCGTACCAAAAAGAGTGGCAATGTTGGGTAAAAACTCACGTTACG
AATTCTATCATGCCCTTTCACTTAAAGAAGAGGAGGATATGATCTTAATGGATATTCAAG
GTTATAAAGAAACTGTCTATCAATCAAGATCCATCGTACCATCTGAGCCTGACTCTTCTC
CAAACTATCCATTATATCGTCAAAAATTACCAACTATCAGAGGTGTTGGTCCAATCAATT
CAATTAGAGATATTAAAGTTAACAGTGCTAAAAATAATTTCTTATCTGAACTTAAGGATA
ATAATAAACAACAACAGCAACAACAAATTGGTAACACTAACGATGAACATACAATAAAAC
CATCCCAAAGAATTAAATACATCGCTCCAACACCAGTTTTAAATAATCCAAATTCAATCG
TTCAATTATTAGCTTTAAAACCTGGTGCTTCAAAATTGGTTGAACAATTAAAAAATAGAA
TGACAATTACAACAAGTAAAATTAATATTTTTGATGTTGAAGATTTAGTTCCAAAAAATA
GTNCCAGTTTTATCAAGAAAAAGTTATAAATTATAAATTAAAATTTTAAATAAATAAATA
ANAAAAAATTATGTAAAACCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
VGLLXSSPVTKSIPLSSIGSSSTSPIISPSSSSSSSPIVGTNLTTGSIHSTSPTPFSLLA
TTTSTTTTNSNKVNSIINSTSQSKSQLLPIHPSLLDTNQMIERVEGNPLSQMKRKDFSIT
HHLSTKLQKTKHFRKEEIWDCFLILKVSGNLVNVKNSTTTTTTSTSTSTSTSTSTSTSST
TTNQPNSITQSNSASNNSLINNGKIKKST---

---KDRHNERIRLYCKQMLDYIVDQTFVEIAKAELVPKRVAMLGKNSRYEFYHALSLKEE
EDMILMDIQGYKETVYQSRSIVPSEPDSSPNYPLYRQKLPTIRGVGPINSIRDIKVNSAK
NNFLSELKDNNKQQQQQQIGNTNDEHTIKPSQRIKYIAPTPVLNNPNSIVQLLALKPGAS
KLVEQLKNRMTITTSKINIFDVEDLVPKNSXSFIKKKL*iin*nfk*inxkklcktk
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxhhl*qnqyhchqlvhhqlhq*yhhhrhhhhhqlleqi*qqvqfiqlhqhhfhy*
qqrhqqqqrivikliql*iqhhnqnhnfyqfihhf*irik*lkelkvihyhk*rekilv*
liiyqlnykkqnilerkrfgivf*y*klvvi**m*kiqqqqqqhqhqhqhqhqhqhqhhq
qlqinqiq*hnqivqviiv*limeklknq---

---sridimkefvyivnkcwiisliklllklpkpssyqkewqcwvkthvtnsimpfhlkk
rri*s*wifkvikklsinqdpsyhlsltllqtihyivknyqlsevlvqsiqleilkltvl
kiisylnlriiinnnsnnklvtltmniq*nhpkelntslqhqf*iiqiqsfny*l*nlvl
qnwlnn*kie*qlqqvkliflmlki*fqkivpvlsrksykl*ikilnk*ixknyvkp

Frame B:
cwptgiitcnkintivinwfiinftnnitiiviiiitncwnkfnnrfnsfnftntifiis
nndinnnne***s*fnykfnitikittftnssitfryesnd*ks*r*siitneekrf*yn
ssfin*itknktf*kgrdlglffniks*w*fskckkfnnnnnninininininininiin
nykstkfnntik*ck***fn**wkn*kin---

---qg*t**knsfil*tnvglyr*snfc*ncqsrartkksgnvg*kltlrilscpft*rr
ggydlngysrl*rnclsikihrti*a*lfsklsiisskitnyqrcwsnqfn*ry*s*qc*
k*fli*t*g***tttattnw*h*r*tynktipkn*ihrsntsfk*skfnrsiisfktwcf
kig*tikk*ndnynk*n*yf*c*rfsskk*xqfyqekvinyklkf*ink*xkim*nq

Frame C:
VGLLXSSPVTKSIPLSSIGSSSTSPIISPSSSSSSSPIVGTNLTTGSIHSTSPTPFSLLA
TTTSTTTTNSNKVNSIINSTSQSKSQLLPIHPSLLDTNQMIERVEGNPLSQMKRKDFSIT
HHLSTKLQKTKHFRKEEIWDCFLILKVSGNLVNVKNSTTTTTTSTSTSTSTSTSTSTSST
TTNQPNSITQSNSASNNSLINNGKIKKST---

---KDRHNERIRLYCKQMLDYIVDQTFVEIAKAELVPKRVAMLGKNSRYEFYHALSLKEE
EDMILMDIQGYKETVYQSRSIVPSEPDSSPNYPLYRQKLPTIRGVGPINSIRDIKVNSAK
NNFLSELKDNNKQQQQQQIGNTNDEHTIKPSQRIKYIAPTPVLNNPNSIVQLLALKPGAS
KLVEQLKNRMTITTSKINIFDVEDLVPKNSXSFIKKKL*iin*nfk*inxkklcktk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP538 (CHP538Q) /CSM/CH/CHP5-B/CHP538Q.Seq.d/                       1259   0.0
VHI134 (VHI134Q) /CSM/VH/VHI1-B/VHI134Q.Seq.d/                       1249   0.0
VHB158 (VHB158Q) /CSM/VH/VHB1-C/VHB158Q.Seq.d/                       1243   0.0
SHI346 (SHI346Q) /CSM/SH/SHI3-B/SHI346Q.Seq.d/                         52   2e-05
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                         50   9e-05
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                         50   9e-05
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                         50   9e-05
VSI138 (VSI138Q) /CSM/VS/VSI1-B/VSI138Q.Seq.d/                         48   4e-04
VSH261 (VSH261Q) /CSM/VS/VSH2-C/VSH261Q.Seq.d/                         48   4e-04
VSD514 (VSD514Q) /CSM/VS/VSD5-A/VSD514Q.Seq.d/                         48   4e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   5e-15  16
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    42   3e-14  17
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    44   9e-14  17
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    44   2e-12  21
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   8e-11  14
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    40   1e-10  15
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   1e-10  11
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    46   5e-10  16
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    40   2e-09  17
AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.    40   3e-09  8
dna update 2005.10. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM698090_1(AM698090|pid:none) Vanderwaltozyma polyspora retrotra...    37   1.2
CP000227_542(CP000227|pid:none) Bacillus cereus Q1, complete gen...    36   3.4
CP000903_464(CP000903|pid:none) Bacillus weihenstephanensis KBAB...    35   5.8
AE013599_974(AE013599|pid:none) Drosophila melanogaster chromoso...    34   10.0
(P17889) RecName: Full=Translation initiation factor IF-2;  &A35...    34   10.0
protein update 2009. 4.11
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.71  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for CHP538 is mit
5' end seq. ID CHP538F
5' end seq. 
>CHP538F.Seq
CTGTTGGCCTACTGGNATCATCACCTGTAACAAAATCAATACCATTGTCATCAATTGGTT
CATCATCAACTTCACCAATAATATCACCATCATCGTCATCATCATCATCACCAATTGTTG
GAACAAATTTAACAACAGGTTCAATTCATTCAACTTCACCAACACCATTTTCATTATTAG
CAACAACGACATCAACAACAACAACGAATAGTAATAAAGTTAATTCAATTATAAATTCAA
CATCACAATCAAAATCACAACTTTTACCAATTCATCCATCACTTTTAGATACGAATCAAA
TGATTGAAAGAGTTGAAGGTAATCCATTATCACAAATGAAGAGAAAAGATTTTAGTATAA
CTCATCATTTATCAACTAAATTACAAAAAACAAAACATTTTAGAAAGGAAGAGATTTGGG
ATTGTTTTTTAATATTAAAAGTTAGTGGTAATTTAGTAAATGTAAAAAATTCAACAACAA
CAACAACAACATCAACATCAACATCAACATCAACATCAACATCAACATCAACATCATCAA
CAACTACAAATCAACCAAATTCAATAACACAATCAAATAGTGCAAGTAATAATAGTTTAA
TTAATAATGGAAAAATTAAAAAATCAACANNNNNNNNNN
Length of 5' end seq. 639
3' end seq. ID CHP538Z
3' end seq. 
>CHP538Z.Seq
NNNNNNNNNNTCAAGGATAGACATAATGAAAGAATTCGTTTATATTGTAAACAAATGTTG
GATTATATCGTTGATCAAACTTTTGTTGAAATTGCCAAAGCCGAGCTCGTACCAAAAAGA
GTGGCAATGTTGGGTAAAAACTCACGTTACGAATTCTATCATGCCCTTTCACTTAAAGAA
GAGGAGGATATGATCTTAATGGATATTCAAGGTTATAAAGAAACTGTCTATCAATCAAGA
TCCATCGTACCATCTGAGCCTGACTCTTCTCCAAACTATCCATTATATCGTCAAAAATTA
CCAACTATCAGAGGTGTTGGTCCAATCAATTCAATTAGAGATATTAAAGTTAACAGTGCT
AAAAATAATTTCTTATCTGAACTTAAGGATAATAATAAACAACAACAGCAACAACAAATT
GGTAACACTAACGATGAACATACAATAAAACCATCCCAAAGAATTAAATACATCGCTCCA
ACACCAGTTTTAAATAATCCAAATTCAATCGTTCAATTATTAGCTTTAAAACCTGGTGCT
TCAAAATTGGTTGAACAATTAAAAAATAGAATGACAATTACAACAAGTAAAATTAATATT
TTTGATGTTGAAGATTTAGTTCCAAAAAATAGTNCCAGTTTTATCAAGAAAAAGTTATAA
ATTATAAATTAAAATTTTAAATAAATAAATAANAAAAAATTATGTAAAACCAAA
Length of 3' end seq. 714
Connected seq. ID CHP538P
Connected seq. 
>CHP538P.Seq
CTGTTGGCCTACTGGNATCATCACCTGTAACAAAATCAATACCATTGTCATCAATTGGTT
CATCATCAACTTCACCAATAATATCACCATCATCGTCATCATCATCATCACCAATTGTTG
GAACAAATTTAACAACAGGTTCAATTCATTCAACTTCACCAACACCATTTTCATTATTAG
CAACAACGACATCAACAACAACAACGAATAGTAATAAAGTTAATTCAATTATAAATTCAA
CATCACAATCAAAATCACAACTTTTACCAATTCATCCATCACTTTTAGATACGAATCAAA
TGATTGAAAGAGTTGAAGGTAATCCATTATCACAAATGAAGAGAAAAGATTTTAGTATAA
CTCATCATTTATCAACTAAATTACAAAAAACAAAACATTTTAGAAAGGAAGAGATTTGGG
ATTGTTTTTTAATATTAAAAGTTAGTGGTAATTTAGTAAATGTAAAAAATTCAACAACAA
CAACAACAACATCAACATCAACATCAACATCAACATCAACATCAACATCAACATCATCAA
CAACTACAAATCAACCAAATTCAATAACACAATCAAATAGTGCAAGTAATAATAGTTTAA
TTAATAATGGAAAAATTAAAAAATCAACA----------TCAAGGATAGACATAATGAAA
GAATTCGTTTATATTGTAAACAAATGTTGGATTATATCGTTGATCAAACTTTTGTTGAAA
TTGCCAAAGCCGAGCTCGTACCAAAAAGAGTGGCAATGTTGGGTAAAAACTCACGTTACG
AATTCTATCATGCCCTTTCACTTAAAGAAGAGGAGGATATGATCTTAATGGATATTCAAG
GTTATAAAGAAACTGTCTATCAATCAAGATCCATCGTACCATCTGAGCCTGACTCTTCTC
CAAACTATCCATTATATCGTCAAAAATTACCAACTATCAGAGGTGTTGGTCCAATCAATT
CAATTAGAGATATTAAAGTTAACAGTGCTAAAAATAATTTCTTATCTGAACTTAAGGATA
ATAATAAACAACAACAGCAACAACAAATTGGTAACACTAACGATGAACATACAATAAAAC
CATCCCAAAGAATTAAATACATCGCTCCAACACCAGTTTTAAATAATCCAAATTCAATCG
TTCAATTATTAGCTTTAAAACCTGGTGCTTCAAAATTGGTTGAACAATTAAAAAATAGAA
TGACAATTACAACAAGTAAAATTAATATTTTTGATGTTGAAGATTTAGTTCCAAAAAATA
GTNCCAGTTTTATCAAGAAAAAGTTATAAATTATAAATTAAAATTTTAAATAAATAAATA
ANAAAAAATTATGTAAAACCAAA
Length of connected seq. 1333
Full length Seq ID -
Full length Seq. -
Length of full length seq. -