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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP537
Library CH
(Link to library)
Clone ID CHP537
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12147-1|Contig-U15540-1
Original site URL
Representative seq. ID CHP537P
(Link to Original site)
Representative DNA sequence 
>CHP537 (CHP537Q) /CSM/CH/CHP5-B/CHP537Q.Seq.d/
ACTGTTGGCCTACTGGGGTAAACTAATTAACACACAAAAATAAAAATAAAAAAAAAAAAA
ATAANTAANTAAAAATAAATTANTNTTTCNTTAACCAAAAAAAAAAXXXXXXXXXXGGTT
ACAGTGGTAAATGCAAAGAGGATTCANNACAAACAACCCAGGATGTNCAATGAGAAAGCT
TTGATTTTGGGATGGCAAATGTCTACGGATGGGACATTTTAANATNCCAAATTTNACAAN
CTGTAAAATGCTGTACCGNAATATTTATCANAACCAAATNCTTACTTTTNCCGCTANATN
CCACCATGGCAAAAAGGGTAAAGTTNCTTNTTGGTGCANAAAATAACATATTAACTNCGT
GT
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgvn*lthknknkkkknx*XKINXXFXNQKK---

---VTVVNAKRIXXKQPRMXNEKALILGWQMSTDGTF*xxkfxxl*navpxylsxpnxyf
xrxxppwqkg*sxxlvxkity*lr
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllg*tn*htkikikkkkixx*k*ixxsltkkk---

---gysgkckedsxqttqdvq*esfdfgmanvygwdilxxqixqxvkcctxifixtkxll
xplxxtmakrvkxlxgaxnniltxc

Frame B:
llaywgklintqk*k*kkkk*xxknklxfx*pkkk---

---VTVVNAKRIXXKQPRMXNEKALILGWQMSTDGTF*xxkfxxl*navpxylsxpnxyf
xrxxppwqkg*sxxlvxkity*lr

Frame C:
cwptgvn*lthknknkkkknx*XKINXXFXNQKK---

---lqw*mqrgfxtnnpgcxmrkl*fwdgkclrmghfxxpnxtxckmlyrniyxnqxltf
xaxxhhgkkgkvxxwcxk*hinxv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP537 (CHP537Q) /CSM/CH/CHP5-B/CHP537Q.Seq.d/                        387   e-107
VSI794 (VSI794Q) /CSM/VS/VSI7-D/VSI794Q.Seq.d/                         48   9e-05
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/                         48   9e-05
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/                         48   9e-05
SSI886 (SSI886Q) /CSM/SS/SSI8-D/SSI886Q.Seq.d/                         48   9e-05
SSA556 (SSA556Q) /CSM/SS/SSA5-C/SSA556Q.Seq.d/                         48   9e-05
SLI323 (SLI323Q) /CSM/SL/SLI3-A/SLI323Q.Seq.d/                         48   9e-05
SLG821 (SLG821Q) /CSM/SL/SLG8-A/SLG821Q.Seq.d/                         48   9e-05
SLA117 (SLA117Q) /CSM/SL/SLA1-A/SLA117Q.Seq.d/                         48   9e-05
SHL560 (SHL560Q) /CSM/SH/SHL5-C/SHL560Q.Seq.d/                         48   9e-05
own update 2002.10. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ486650|CJ486650.1 Macaca fascicularis mRNA, clone: QtsA-14283, 5' end, expressed in testis.    46   0.47   1
AC106636|AC106636.4 Rattus norvegicus clone CH230-236K14, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44   1.9    1
CJ439625|CJ439625.1 Macaca fascicularis mRNA, clone: QccE-16904, 5' end, expressed in cerebellum cortex.    44   1.9    1
CJ465780|CJ465780.1 Macaca fascicularis mRNA, clone: QnpA-14922, 5' end, expressed in brain parietal lobe.    44   1.9    1
CJ447754|CJ447754.1 Macaca fascicularis mRNA, clone: QflA-13101, 5' end, expressed in brain frontal lobe.    34   2.1    2
CJ438533|CJ438533.1 Macaca fascicularis mRNA, clone: QccE-15757, 5' end, expressed in cerebellum cortex.    42   7.3    1
CJ488690|CJ488690.1 Macaca fascicularis mRNA, clone: QtsA-16411, 5' end, expressed in testis.    42   7.3    1
CJ479191|CJ479191.1 Macaca fascicularis mRNA, clone: QtrA-14419, 5' end, expressed in brain temporal lobe.    42   7.3    1
CJ458946|CJ458946.1 Macaca fascicularis mRNA, clone: QmoA-11047, 5' end, expressed in medulla oblongata.    42   7.3    1
CJ490990|CJ490990.1 Macaca fascicularis mRNA, clone: QtsA-18807, 5' end, expressed in testis.    42   7.3    1
dna update 2005.10. 4
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 402,261,554
protein update 2009. 4.11
PSORT 

 psg: 0.60  gvh: 0.41  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CHP537 is mit
5' end seq. ID CHP537F
5' end seq. 
>CHP537F.Seq
ACTGTTGGCCTACTGGGGTAAACTAATTAACACACAAAAATAAAAATAAAAAAAAAAAAA
ATAANTAANTAAAAATAAATTANTNTTTCNTTAACCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 116
3' end seq. ID CHP537Z
3' end seq. 
>CHP537Z.Seq
NNNNNNNNNNGGTTACAGTGGTAAATGCAAAGAGGATTCANNACAAACAACCCAGGATGT
NCAATGAGAAAGCTTTGATTTTGGGATGGCAAATGTCTACGGATGGGACATTTTAANATN
CCAAATTTNACAANCTGTAAAATGCTGTACCGNAATATTTATCANAACCAAATNCTTACT
TTTNCCGCTANATNCCACCATGGCAAAAAGGGTAAAGTTNCTTNTTGGTGCANAAAATAA
CATATTAACTNCGTGT
Length of 3' end seq. 256
Connected seq. ID CHP537P
Connected seq. 
>CHP537P.Seq
ACTGTTGGCCTACTGGGGTAAACTAATTAACACACAAAAATAAAAATAAAAAAAAAAAAA
ATAANTAANTAAAAATAAATTANTNTTTCNTTAACCAAAAAAAAAA----------GGTT
ACAGTGGTAAATGCAAAGAGGATTCANNACAAACAACCCAGGATGTNCAATGAGAAAGCT
TTGATTTTGGGATGGCAAATGTCTACGGATGGGACATTTTAANATNCCAAATTTNACAAN
CTGTAAAATGCTGTACCGNAATATTTATCANAACCAAATNCTTACTTTTNCCGCTANATN
CCACCATGGCAAAAAGGGTAAAGTTNCTTNTTGGTGCANAAAATAACATATTAACTNCGT
GT
Length of connected seq. 352
Full length Seq ID -
Full length Seq. -
Length of full length seq. -