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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP536
Library CH
(Link to library)
Clone ID CHP536
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16458-1
Original site URL
Representative seq. ID CHP536P
(Link to Original site)
Representative DNA sequence 
>CHP536 (CHP536Q) /CSM/CH/CHP5-B/CHP536Q.Seq.d/
CTGTTGGCCTACTGGNATTAATTCTAATCAAATAAAAAATGAATAAGAAATTAGAACAAC
TTGAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAACAAATACTGGTGTTT
CTTTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGNAGGTCCAACTCTTTTGGAA
GATTTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAATTCCAGAAAGAATT
GTTCATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATAAGGATCATAGTAAA
TTAACAAAAGCAGATTTCTTGAGTAAACAAGATAAGGAAACACCAGTTTTCATTCGTATA
TCAACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACGTTCATGGATTTGCT
GTGAAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATAATATGCCAGTGTTT
TTTATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAAAGATGGAACCACAG
AATGAAATGCCAACTGGGGGAAGTGCTCATGATACTTTTTATGATTTXXXXXXXXXXAAT
GTTCAAGACCAGAAGTTCGTACACGTTATGTTAACAATATCTTGGTAAACATTGATTCAG
TACTCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACCAACTTCAACCAAAC
CAATCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCAAATTTATTATCTG
GTGATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTTGACTATGATGACG
TTATCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATGTTAGTCTCTTCAA
CTTTGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAAGGTACAATCATTG
GTAACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACAGAAGAAGCCACTA
AAATCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCCTTTAAACATCTCA
AAACCATTGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTTCGTTTACCTCAAG
ATCATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACAATTNCTTTTATTCA
CTTGCTCATCATCGTGTTTGGGAAAGAGAATCAAAAGTTTNCCAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
llaywx*f*snkk*irn*nnlknskqmiriqfiqqqilvflyqmmqih*KQVQXGPTLLE
DFVLREKITHFDHERIPERIVHARGTGAHGYFLSYKDHSKLTKADFLSKQDKETPVFIRI
STVQGPRGSADTVRDVHGFAVKFYTDEGNYDLVGNNMPVFFIQDASSFPDFVHAVKMEPQ
NEMPTGGSAHDTFYD---

---CSRPEVRTRYVNNILVNIDSVLAEKVAKNLGVKIEPTSTKPIKKIMVKPSPALSQPN
LLSGDIVSRRISVIIEKGVDYDDVINFKDDMEKRGAMVMLVSSTLAQVECSGGEMLSPKG
TIIGNPSIFFDAVYVPKSTEEATKILSDDGNFLHYILEAFKHLKTIAFGGSVSVIKELLR
LPQDHGLLLGNGYKDITEQXLLFTCSSSCLGKRIKSXPK
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywx*f*snkk*irn*nnlknskqmiriqfiqqqilvflyqmmqih*KQVQXGPTLLE
DFVLREKITHFDHERIPERIVHARGTGAHGYFLSYKDHSKLTKADFLSKQDKETPVFIRI
STVQGPRGSADTVRDVHGFAVKFYTDEGNYDLVGNNMPVFFIQDASSFPDFVHAVKMEPQ
NEMPTGGSAHDTFYD---

---nvqdqkfvhvmltisw*tliqyslkklprilv*rlnqlqpnqsrrlw*nhhqlylnq
iyylvislvvefqlslkkvltmmtlsiskmiwrkevqw*c*slqlwhk*nvvvvkcylqk
vqslvtlpfslmqsmfqnqqkkplksslmmvisfitflkplniskplhlvvlyr*lknyf
vylkimvyylvmvikislnnxfyslahhrvwereskvxq

Frame B:
cwptginsnqikne*eirtt*kiqnk**esslfnnkywcffir*ckfiksrskxvqlfwk
ilf*ekr*lilimkefqkelfmqeeqelmviffliriivn*qkqis*vnkirkhqfsfvy
qqfkdqedqliqfvtfmdll*nsiltkvimi*lviicqcflfkmqvhsqilymq*rwnhr
mkcqlgevlmilfmi---

---mfktrssytlc*qylgkh*fstr*kscqeswckd*tnfnqtnqedygktitsfistk
fiiw*yr*s*nfsyh*krc*l**ryqfqr*ygekrcngnvslfnfgtsrm*ww*nviskr
ynhw*pfhfl*cslcskinrrsh*npl**w*fpslhs*sl*tsqnhciwwfcigd*rits
ftsrswfitw*wl*ryh*tixfihlliivfgkenqkfxk

Frame C:
vgllxlilik*kmnkkleqlekfktndknpvysttntgvslsddanslkagpxrsnsfgr
fcfkrkdnsf*s*knsrkncsckrnrsswlfsfl*gs**inksrfle*tr*gntsfhsyi
nssrtkris*yss*rswicceily*rr*l*ssw**yasvfysrckfiprfctcskdgtte
*nanwgkcs*yfl*f---

---CSRPEVRTRYVNNILVNIDSVLAEKVAKNLGVKIEPTSTKPIKKIMVKPSPALSQPN
LLSGDIVSRRISVIIEKGVDYDDVINFKDDMEKRGAMVMLVSSTLAQVECSGGEMLSPKG
TIIGNPSIFFDAVYVPKSTEEATKILSDDGNFLHYILEAFKHLKTIAFGGSVSVIKELLR
LPQDHGLLLGNGYKDITEQXLLFTCSSSCLGKRIKSXPK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP536 (CHP536Q) /CSM/CH/CHP5-B/CHP536Q.Seq.d/                       2389   0.0
CHP283 (CHP283Q) /CSM/CH/CHP2-D/CHP283Q.Seq.d/                       1269   0.0
SHG560 (SHG560Q) /CSM/SH/SHG5-C/SHG560Q.Seq.d/                       1259   0.0
SFK745 (SFK745Q) /CSM/SF/SFK7-B/SFK745Q.Seq.d/                       1259   0.0
SFG171 (SFG171Q) /CSM/SF/SFG1-C/SFG171Q.Seq.d/                       1259   0.0
SFG141 (SFG141Q) /CSM/SF/SFG1-B/SFG141Q.Seq.d/                       1259   0.0
SFD809 (SFD809Q) /CSM/SF/SFD8-A/SFD809Q.Seq.d/                       1259   0.0
SFD467 (SFD467Q) /CSM/SF/SFD4-C/SFD467Q.Seq.d/                       1259   0.0
CHO459 (CHO459Q) /CSM/CH/CHO4-C/CHO459Q.Seq.d/                       1259   0.0
CHN463 (CHN463Q) /CSM/CH/CHN4-C/CHN463Q.Seq.d/                       1259   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY386221|AY386221.1 Dictyostelium discoideum catalase B gene, complete cds.  1174   0.0    5
AF183177|AF183177.1 Dictyostelium discoideum catalase B (catB) mRNA, partial cds.  1174   0.0    2
CZ543716|CZ543716.1 SRAA-aad51f01.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    82   2e-25  4
CP000001|CP000001.1 Bacillus cereus E33L, complete genome.         90   5e-16  2
AE017000|AE017000.1 Bacillus cereus ATCC 14579 section 3 of 18 of the complete genome.    60   3e-13  12
AE017026|AE017026.1 Bacillus anthracis str. Ames section 3 of 18 of the complete genome.    58   7e-11  10
AE017355|AE017355.1 Bacillus thuringiensis serovar konkukian str. 97-27, complete genome.    60   1e-09  2
AE017334|AE017334.2 Bacillus anthracis str. 'Ames Ancestor', complete genome.    58   2e-08  2
AE017225|AE017225.1 Bacillus anthracis str. Sterne, complete genome.    58   2e-08  2
L02551|L02551.1 B.firmus catalase (katA) gene, 5' end.             50   1e-06  2
dna update 2005.10. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DH8) RecName: Full=Catalase-B;          EC=1.11.1.6;              385   e-110
AY386221_1(AY386221|pid:none) Dictyostelium discoideum catalase ...   385   e-110
AF183177_1(AF183177|pid:none) Dictyostelium discoideum catalase ...   385   e-110
CP000949_5083(CP000949|pid:none) Pseudomonas putida W619, comple...   253   2e-67
CP000284_2371(CP000284|pid:none) Methylobacillus flagellatus KT,...   249   1e-65
CP000712_130(CP000712|pid:none) Pseudomonas putida F1, complete ...   248   2e-65
(Q9I1W8) RecName: Full=Catalase HPII;          EC=1.11.1.6;  &AE...   244   2e-65
CP000438_2942(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA...   244   2e-65
CP000094_64(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, co...   248   3e-64
CP000076_74(CP000076|pid:none) Pseudomonas fluorescens Pf-5, com...   246   9e-64
protein update 2009. 4.11
PSORT 

 psg: 0.48  gvh: 0.31  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHP536 is cyt
5' end seq. ID CHP536F
5' end seq. 
>CHP536F.Seq
CTGTTGGCCTACTGGNATTAATTCTAATCAAATAAAAAATGAATAAGAAATTAGAACAAC
TTGAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAACAAATACTGGTGTTT
CTTTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGNAGGTCCAACTCTTTTGGAA
GATTTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAATTCCAGAAAGAATT
GTTCATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATAAGGATCATAGTAAA
TTAACAAAAGCAGATTTCTTGAGTAAACAAGATAAGGAAACACCAGTTTTCATTCGTATA
TCAACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACGTTCATGGATTTGCT
GTGAAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATAATATGCCAGTGTTT
TTTATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAAAGATGGAACCACAG
AATGAAATGCCAACTGGGGGAAGTGCTCATGATACTTTTTATGATTTNNNNNNNNNN
Length of 5' end seq. 597
3' end seq. ID CHP536Z
3' end seq. 
>CHP536Z.Seq
NNNNNNNNNNAATGTTCAAGACCAGAAGTTCGTACACGTTATGTTAACAATATCTTGGTA
AACATTGATTCAGTACTCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACCA
ACTTCAACCAAACCAATCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCA
AATTTATTATCTGGTGATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTT
GACTATGATGACGTTATCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATG
TTAGTCTCTTCAACTTTGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAA
GGTACAATCATTGGTAACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACA
GAAGAAGCCACTAAAATCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCC
TTTAAACATCTCAAAACCATTGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTT
CGTTTACCTCAAGATCATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACAA
TTNCTTTTATTCACTTGCTCATCATCGTGTTTGGGAAAGAGAATCAAAAGTTTNCCAAAA
Length of 3' end seq. 660
Connected seq. ID CHP536P
Connected seq. 
>CHP536P.Seq
CTGTTGGCCTACTGGNATTAATTCTAATCAAATAAAAAATGAATAAGAAATTAGAACAAC
TTGAAAAATTCAAAACAAATGATAAGAATCCAGTTTATTCAACAACAAATACTGGTGTTT
CTTTATCAGATGATGCAAATTCATTAAAAGCAGGTCCAAGNAGGTCCAACTCTTTTGGAA
GATTTTGTTTTAAGAGAAAAGATAACTCATTTTGATCATGAAAGAATTCCAGAAAGAATT
GTTCATGCAAGAGGAACAGGAGCTCATGGTTATTTTCTTTCTTATAAGGATCATAGTAAA
TTAACAAAAGCAGATTTCTTGAGTAAACAAGATAAGGAAACACCAGTTTTCATTCGTATA
TCAACAGTTCAAGGACCAAGAGGATCAGCTGATACAGTTCGTGACGTTCATGGATTTGCT
GTGAAATTCTATACTGACGAAGGTAATTATGATCTAGTTGGTAATAATATGCCAGTGTTT
TTTATTCAAGATGCAAGTTCATTCCCAGATTTTGTACATGCAGTAAAGATGGAACCACAG
AATGAAATGCCAACTGGGGGAAGTGCTCATGATACTTTTTATGATTT----------AAT
GTTCAAGACCAGAAGTTCGTACACGTTATGTTAACAATATCTTGGTAAACATTGATTCAG
TACTCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACCAACTTCAACCAAAC
CAATCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCAAATTTATTATCTG
GTGATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTTGACTATGATGACG
TTATCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATGTTAGTCTCTTCAA
CTTTGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAAGGTACAATCATTG
GTAACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACAGAAGAAGCCACTA
AAATCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCCTTTAAACATCTCA
AAACCATTGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTTCGTTTACCTCAAG
ATCATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACAATTNCTTTTATTCA
CTTGCTCATCATCGTGTTTGGGAAAGAGAATCAAAAGTTTNCCAAAA
Length of connected seq. 1237
Full length Seq ID -
Full length Seq. -
Length of full length seq. -