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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHP533
Library CH
(Link to library)
Clone ID CHP533
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13117-1|Contig-U15928-1
Original site URL
Representative seq. ID CHP533P
(Link to Original site)
Representative DNA sequence 
>CHP533 (CHP533Q) /CSM/CH/CHP5-B/CHP533Q.Seq.d/
TTANTTAAAAAGATNGATANTAAATCAAAGGGGAAANCAGTTNTNGAANGTAATNCNTTA
NTTTATAANACNTTACCANATNGGNCAAAAGTTGAANATANTAXXXXXXXXXXTGGTAGA
GTACCTGCAAGTATGGATGATGAATCTGATCAACAAGAACAATTACAATTAGATGATGCT
AAAATTCAAGAAATTGAAGAGAAATTTGAAGAAAAAGAAAAAACAATTGAAAAAACAGAT
GAAAAAACAGATGAAAAAACAAATGAAAAGAAACAATCAAAGAAAGATATGAGAGTAATT
TATGAAGCAACTAGATTATTACTTAGATTTTTAGATAATTCTGAATTATCAAATCATCAA
GAGAAAATGAAACAATTGATTGAGGAATCAGTTGAACCATTCTTTAGTTTATTACAATCT
CCTTTCCCAATTTTACAAGTTGAAGGTGCAAAAGGTTTAGTTTTACTCATTAAACATGAT
AAACAACTCTTTTTATCACGTCCATCATGGGTAAAAGATTTGGTTGAAGTTTTATCCCTT
TCAATCATTCCTTTCCAACAACTCTCAAGAGAACAATCAACAATTACTACCGATCCAAAT
CATCAAAAATTAATTGCACAAATTCAATCAAATTGTAATTTTAGTACCGAACTTCAAAAT
GTTATCCTTTCAAATATTTTTTACAATTTCTCTTTAGATGAATCAATTTGTAAAAAAATG
AAGGATCAAAATGTTATTTCTGAATTAAAAACTTTAAAATCAAAACAAGATGCACCACAA
TCATTAACAAATTTAATTCAAAAAATTTTAGTTCAATTAACAATTTAATTTTAATTAAAT
TAAAAAAAAAAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
LXKKXDXKSKGKXVXEXNXLXYXTLPXXXKVEXX---

---GRVPASMDDESDQQEQLQLDDAKIQEIEEKFEEKEKTIEKTDEKTDEKTNEKKQSKK
DMRVIYEATRLLLRFLDNSELSNHQEKMKQLIEESVEPFFSLLQSPFPILQVEGAKGLVL
LIKHDKQLFLSRPSWVKDLVEVLSLSIIPFQQLSREQSTITTDPNHQKLIAQIQSNCNFS
TELQNVILSNIFYNFSLDESICKKMKDQNVISELKTLKSKQDAPQSLTNLIQKILVQLTI
*f*ln*kkki
Translated Amino Acid sequence (All Frames) 
Frame A:
LXKKXDXKSKGKXVXEXNXLXYXTLPXXXKVEXX---

---w*stckyg**i*strtitir*c*nsrn*rei*rkrknn*knr*knr*knk*ketike
ryesnl*sn*iit*ifr*f*iikssrenetid*gis*til*fitisfpnfts*rckrfsf
th*t**ttlfitsimgkrfg*sfipfnhsfpttlkrtinnyyrsksskinctnsikl*f*
yrtskcypfkyflqflfr*inl*knegskcyf*iknfkiktrcttiinkfnsknfssinn
liliklkkkn

Frame B:
xlkrxixnqrgxqxxxvxxxfixxyxxgqklxix---

---GRVPASMDDESDQQEQLQLDDAKIQEIEEKFEEKEKTIEKTDEKTDEKTNEKKQSKK
DMRVIYEATRLLLRFLDNSELSNHQEKMKQLIEESVEPFFSLLQSPFPILQVEGAKGLVL
LIKHDKQLFLSRPSWVKDLVEVLSLSIIPFQQLSREQSTITTDPNHQKLIAQIQSNCNFS
TELQNVILSNIFYNFSLDESICKKMKDQNVISELKTLKSKQDAPQSLTNLIQKILVQLTI
*f*ln*kkki

Frame C:
x*kdxx*ikgexsxxx*xxxl*xxtxxxks*xx---

---veylqvwmmnlinknnyn*mmlkfkklkrnlkkkkkqlkkqmkkqmkkqmkrnnqrk
i*e*fmkqldyyldf*iilnyqiikrk*nn*lrnqlnhslvyynllsqfyklkvqkv*fy
slnminnsfyhvhhg*kiwlkfypfqsflsnnsqennqqllpiqiikn*lhkfnqivilv
pnfkmlsfqifftisl*mnqfvkk*rikmlfln*kl*nqnkmhhnh*qi*fkkf*fn*qf
nfn*ikkkk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP533 (CHP533Q) /CSM/CH/CHP5-B/CHP533Q.Seq.d/                        942   0.0
VHD768 (VHD768Q) /CSM/VH/VHD7-C/VHD768Q.Seq.d/                        934   0.0
VHB762 (VHB762Q) /CSM/VH/VHB7-C/VHB762Q.Seq.d/                        934   0.0
VHB203 (VHB203Q) /CSM/VH/VHB2-A/VHB203Q.Seq.d/                        934   0.0
SFJ725 (SFJ725Q) /CSM/SF/SFJ7-B/SFJ725Q.Seq.d/                        934   0.0
CHR325 (CHR325Q) /CSM/CH/CHR3-B/CHR325Q.Seq.d/                        934   0.0
CHR291 (CHR291Q) /CSM/CH/CHR2-D/CHR291Q.Seq.d/                        934   0.0
CHQ524 (CHQ524Q) /CSM/CH/CHQ5-A/CHQ524Q.Seq.d/                        934   0.0
CHM833 (CHM833Q) /CSM/CH/CHM8-B/CHM833Q.Seq.d/                        934   0.0
CHL851 (CHL851Q) /CSM/CH/CHL8-C/CHL851Q.Seq.d/                        934   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF006055|AF006055.1 Dictyostelium discoideum darlin (darA) gene, complete cds.   844   0.0    4
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   3e-04  21
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   0.001  11
AF068054|AF068054.1 Mus musculus domesticus strain B6-YTIR sex-determining region of Y protein (Sry) gene, complete cds.    40   0.010  2
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    38   0.013  11
BX663495|BX663495.9 Zebrafish DNA sequence from clone DKEY-116G14 in linkage group 2.    48   0.048  3
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   0.088  20
BA000017|BA000017.4 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome.    38   0.17   22
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34   0.21   10
AC139707|AC139707.10 Medicago truncatula clone mth2-16b22, complete sequence.    38   0.26   5
dna update 2005.10. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000749_2548(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    36   1.3
protein update 2008.11. 7
PSORT 

 psg: 0.57  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CHP533 is cyt
5' end seq. ID CHP533F
5' end seq. 
>CHP533F.Seq
TTANTTAAAAAGATNGATANTAAATCAAAGGGGAAANCAGTTNTNGAANGTAATNCNTTA
NTTTATAANACNTTACCANATNGGNCAAAAGTTGAANATANTANNNNNNNNNN
Length of 5' end seq. 113
3' end seq. ID CHP533Z
3' end seq. 
>CHP533Z.Seq
NNNNNNNNNNTGGTAGAGTACCTGCAAGTATGGATGATGAATCTGATCAACAAGAACAAT
TACAATTAGATGATGCTAAAATTCAAGAAATTGAAGAGAAATTTGAAGAAAAAGAAAAAA
CAATTGAAAAAACAGATGAAAAAACAGATGAAAAAACAAATGAAAAGAAACAATCAAAGA
AAGATATGAGAGTAATTTATGAAGCAACTAGATTATTACTTAGATTTTTAGATAATTCTG
AATTATCAAATCATCAAGAGAAAATGAAACAATTGATTGAGGAATCAGTTGAACCATTCT
TTAGTTTATTACAATCTCCTTTCCCAATTTTACAAGTTGAAGGTGCAAAAGGTTTAGTTT
TACTCATTAAACATGATAAACAACTCTTTTTATCACGTCCATCATGGGTAAAAGATTTGG
TTGAAGTTTTATCCCTTTCAATCATTCCTTTCCAACAACTCTCAAGAGAACAATCAACAA
TTACTACCGATCCAAATCATCAAAAATTAATTGCACAAATTCAATCAAATTGTAATTTTA
GTACCGAACTTCAAAATGTTATCCTTTCAAATATTTTTTACAATTTCTCTTTAGATGAAT
CAATTTGTAAAAAAATGAAGGATCAAAATGTTATTTCTGAATTAAAAACTTTAAAATCAA
AACAAGATGCACCACAATCATTAACAAATTTAATTCAAAAAATTTTAGTTCAATTAACAA
TTTAATTTTAATTAAATTAAAAAAAAAAAATAA
Length of 3' end seq. 753
Connected seq. ID CHP533P
Connected seq. 
>CHP533P.Seq
TTANTTAAAAAGATNGATANTAAATCAAAGGGGAAANCAGTTNTNGAANGTAATNCNTTA
NTTTATAANACNTTACCANATNGGNCAAAAGTTGAANATANTA----------TGGTAGA
GTACCTGCAAGTATGGATGATGAATCTGATCAACAAGAACAATTACAATTAGATGATGCT
AAAATTCAAGAAATTGAAGAGAAATTTGAAGAAAAAGAAAAAACAATTGAAAAAACAGAT
GAAAAAACAGATGAAAAAACAAATGAAAAGAAACAATCAAAGAAAGATATGAGAGTAATT
TATGAAGCAACTAGATTATTACTTAGATTTTTAGATAATTCTGAATTATCAAATCATCAA
GAGAAAATGAAACAATTGATTGAGGAATCAGTTGAACCATTCTTTAGTTTATTACAATCT
CCTTTCCCAATTTTACAAGTTGAAGGTGCAAAAGGTTTAGTTTTACTCATTAAACATGAT
AAACAACTCTTTTTATCACGTCCATCATGGGTAAAAGATTTGGTTGAAGTTTTATCCCTT
TCAATCATTCCTTTCCAACAACTCTCAAGAGAACAATCAACAATTACTACCGATCCAAAT
CATCAAAAATTAATTGCACAAATTCAATCAAATTGTAATTTTAGTACCGAACTTCAAAAT
GTTATCCTTTCAAATATTTTTTACAATTTCTCTTTAGATGAATCAATTTGTAAAAAAATG
AAGGATCAAAATGTTATTTCTGAATTAAAAACTTTAAAATCAAAACAAGATGCACCACAA
TCATTAACAAATTTAATTCAAAAAATTTTAGTTCAATTAACAATTTAATTTTAATTAAAT
TAAAAAAAAAAAATAA
Length of connected seq. 846
Full length Seq ID -
Full length Seq. -
Length of full length seq. -