>CHP532 (CHP532Q) /CSM/CH/CHP5-B/CHP532Q.Seq.d/
XXXXXXXXXXGGTNTNTTTGAAGGCGATATTTTGTGGGGTGATAATGATGAATACTTTAG
TGATANCTNCCGTTATGTNGATGAAGAAGATANTGATGANGATTTCAATGGTAATGANGA
ATTTGAAATGGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATANGCATN
TTATTAAANTAAACTTTTTTTCATNANNAAATAATAATAATAATTTATATATACTANTCA
TTAAT

---VXLKAIFCGVIMMNTLVIXXVMXMKKIXMXISMVMXNLKWMLKVISKKMISKKNXHX
IKXNFFSXXNNNNNLYILXIN

Frame A:
---VXLKAIFCGVIMMNTLVIXXVMXMKKIXMXISMVMXNLKWMLKVISKKMISKKNXHX
IKXNFFSXXNNNNNLYILXIN


Frame B:
---xx*rryfvg****il**xlplcx*rrx**xfqw**xi*ngc*r*fprr*frrrixxl
lx*tffhxxiiiiiyiyxsl


Frame C:
---xfegdilwgdndeyfsdxxryvdeedxdxdfngnxefemdvegdfqeddfeeexaxy
*xklffxxk****fiytxh*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP532 (CHP532Q) /CSM/CH/CHP5-B/CHP532Q.Seq.d/                        335   2e-91
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                        281   2e-75
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/                        281   2e-75
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/                        281   2e-75
SSL212 (SSL212Q) /CSM/SS/SSL2-A/SSL212Q.Seq.d/                        281   2e-75
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/                        281   2e-75
SSJ312 (SSJ312Q) /CSM/SS/SSJ3-A/SSJ312Q.Seq.d/                        281   2e-75
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/                        281   2e-75
SSH773 (SSH773Q) /CSM/SS/SSH7-D/SSH773Q.Seq.d/                        281   2e-75
SSH577 (SSH577Q) /CSM/SS/SSH5-D/SSH577Q.Seq.d/                        281   2e-75

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   276   1e-75  6
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   276   5e-75  2
CR954297|CR954297.11 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-69M3.    50   6e-09  2
AL928842|AL928842.13 Zebrafish DNA sequence from clone CH211-279E11 in linkage group 17.    48   2e-08  2
AC147497|AC147497.22 Medicago truncatula clone mth2-138p6, WORKING DRAFT SEQUENCE, 2 ordered pieces.    42   5e-06  2
CG926801|CG926801.1 MBEMW62TR mth2 Medicago truncatula genomic clone 5L3, genomic survey sequence.    42   5e-06  2
CK401566|CK401566.1 AUF_IfInt_204_a09 Ictalurus furcatus intestine cDNA library Ictalurus furcatus cDNA 5', mRNA sequence.    42   7e-06  2
AL935189|AL935189.7 Zebrafish DNA sequence from clone CH211-235F12.    50   8e-06  3
CR339052|CR339052.6 Zebrafish DNA sequence from clone CH211-218E6 in linkage group 10.    40   1e-04  5
BX470255|BX470255.16 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48   1e-04  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    56   3e-07
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD...    35   1.0
(P14586) Histidine-rich protein.  &A29653(A29653) &M17028_2(M170...    35   1.0
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    34   1.4
AC136522_14(AC136522|pid:none) Oryza sativa (japonica cultivar-g...    33   4.0
CP001016_3177(CP001016|pid:none) Beijerinckia indica subsp. indi...    32   8.9

 psg: 0.99  gvh: 0.49  alm: 0.28  top: 0.60  tms: 0.07  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHP532 is nuc

>CHP532Z.Seq
NNNNNNNNNNGGTNTNTTTGAAGGCGATATTTTGTGGGGTGATAATGATGAATACTTTAG
TGATANCTNCCGTTATGTNGATGAAGAAGATANTGATGANGATTTCAATGGTAATGANGA
ATTTGAAATGGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATANGCATN
TTATTAAANTAAACTTTTTTTCATNANNAAATAATAATAATAATTTATATATACTANTCA
TTAAT