>CHP531 (CHP531Q) /CSM/CH/CHP5-B/CHP531Q.Seq.d/
CTGTTGGCCTACTGGNAATTTCTCTGTTTTTCTATCTCTACCCATCTTCATTTATTTATT
TCTTTATTTCTTTATTTATTTATTTATTTATTTATTTATTTTAAAAATATTTCAAAACAA
AATAATAATAATACATAATAATTATTAAATAAATTACATGTTGTAAAAATAATAAAATAG
AATAGAATGGCATTTGGGGCATTGATTGTATTTGGTAAGAATTCTCATGGTCAAATTGGT
ATTGAAATTGATAAAGAGTTTATTTATAATCAAGATAATTATACAGGTATACCAACTTTA
TTACCAAATTATTATAATGTTAAAAAGGTGTCATGTGGTGTGCAACATACAGGATTCATT
ACTGGAACAGGCAATTTATATATGTTTGGTAATGGTAGTTTTGGTAAATTGGGTACAGGC
GATACTGAAGATAGATCAGAGCCAACACTAGTGGAGATGAATCACTCAATTAGAGATTTA
CAATGCGGGAATGATCATTCAATAGCGTTGACTTCCTCATCGCAAGTTTTGACATGGGGC
AGTTCATCACTGGGCCGTTTGGGTCAAXXXXXXXXXX

llaywxflcfsisthlhlfislflylfiylfiyfkniskqnnnnt**llnklhvvkiik*
NRMAFGALIVFGKNSHGQIGIEIDKEFIYNQDNYTGIPTLLPNYYNVKKVSCGVQHTGFI
TGTGNLYMFGNGSFGKLGTGDTEDRSEPTLVEMNHSIRDLQCGNDHSIALTSSSQVLTWG
SSSLGRLG---

Frame A:
llaywxflcfsisthlhlfislflylfiylfiyfkniskqnnnnt**llnklhvvkiik*
NRMAFGALIVFGKNSHGQIGIEIDKEFIYNQDNYTGIPTLLPNYYNVKKVSCGVQHTGFI
TGTGNLYMFGNGSFGKLGTGDTEDRSEPTLVEMNHSIRDLQCGNDHSIALTSSSQVLTWG
SSSLGRLG---


Frame B:
cwptgnfsvflslpifiylflyffiylfiylfilkifqnkiiiihnny*inyml*k**nr
iewhlgh*lylvrilmvklvlklikslfiikiiiqvyqlyyqiiimlkrchvvcniqdsl
leqaiyiclvmvvlvnwvqailkidqsqh*wr*itqleiynagmiiq*r*lphrkf*hga
vhhwavwv---


Frame C:
vgllxislffylypssfiyffislfiylfiylf*kyfktk***yiiiik*itccknnkie
*ngiwgidciw*efswsnwy*n**rvyl*sr*lyrytnfitkll*c*kgvmwcatyrihy
wnrqfiyvw*w*fw*igyrry*r*irantsgdesln*rftmre*sfnsvdfliasfdmgq
fitgpfgs---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHP531 (CHP531Q) /CSM/CH/CHP5-B/CHP531Q.Seq.d/                        759   0.0
VHJ729 (VHJ729Q) /CSM/VH/VHJ7-B/VHJ729Q.Seq.d/                        630   e-180
AHK296 (AHK296Q) /CSM/AH/AHK2-D/AHK296Q.Seq.d/                         46   6e-04
VFC302 (VFC302Q) /CSM/VF/VFC3-A/VFC302Q.Seq.d/                         42   0.009
AFO349 (AFO349Q) /CSM/AF/AFO3-C/AFO349Q.Seq.d/                         42   0.009
AFK133 (AFK133Q) /CSM/AF/AFK1-B/AFK133Q.Seq.d/                         42   0.009
AFH646 (AFH646Q) /CSM/AF/AFH6-B/AFH646Q.Seq.d/                         42   0.009
AFA112 (AFA112Q) /CSM/AF/AFA1-A/AFA112Q.Seq.d/                         42   0.009
VFO624 (VFO624Q) /CSM/VF/VFO6-A/VFO624Q.Seq.d/                         38   0.14
VFK677 (VFK677Q) /CSM/VF/VFK6-D/VFK677Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CJ481522|CJ481522.1 Macaca fascicularis mRNA, clone: QtrA-17214, 5' end, expressed in brain temporal lobe.    48   0.19   1
CG740374|CG740374.1 ZMMBBc0191I02r ZMMBBc (EcoRI) Zea mays subsp. mays genomic clone ZMMBBc0191I02 3', genomic survey sequence.    48   0.19   1
AC021192|AC021192.7 Homo sapiens BAC clone RP11-767N15 from 4, complete sequence.    38   0.60   7
AF296835|AF296835.1 Arabidopsis thaliana BAC T8M17.                44   0.68   2
CG380211|CG380211.1 OGXED78TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0588N12, genomic survey sequence.    36   1.4    2
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   1.4    7
AC090483|AC090483.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence.    44   1.8    3
CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    38   2.9    16
AC112514|AC112514.1 Oryza sativa chromosome 10 clone OSJNAb0023M11, complete sequence.    44   3.0    1
AC027661|AC027661.1 Oryza sativa subsp. japonica BAC nbxb0049A03, chromosome 10, complete sequence.    44   3.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX538351_89(BX538351|pid:none) Cryptosporidium parvum chromosome...    69   7e-11
(Q15751) RecName: Full=Probable E3 ubiquitin-protein ligase HERC...    68   1e-10
AE016823_1428(AE016823|pid:none) Leptospira interrogans serovar ...    66   6e-10
BC134574_1(BC134574|pid:none) Bos taurus retinitis pigmentosa GT...    66   7e-10
AE014298_3135(AE014298|pid:none) Drosophila melanogaster chromos...    64   2e-09
CR954216_207(CR954216|pid:none) Ostreococcus tauri strain OTTH05...    64   4e-09
CP000667_2312(CP000667|pid:none) Salinispora tropica CNB-440, co...    64   4e-09
CP001159_266(CP001159|pid:none) Thalassiosira pseudonana CCMP133...    64   4e-09
AJ851682_1(AJ851682|pid:none) Gallus gallus mRNA for hypothetica...    63   6e-09
AK102785_1(AK102785|pid:none) Oryza sativa Japonica Group cDNA c...    63   6e-09

 psg: 0.96  gvh: 0.51  alm: 0.49  top: 0.37  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHP531 is cyt

>CHP531F.Seq
CTGTTGGCCTACTGGNAATTTCTCTGTTTTTCTATCTCTACCCATCTTCATTTATTTATT
TCTTTATTTCTTTATTTATTTATTTATTTATTTATTTATTTTAAAAATATTTCAAAACAA
AATAATAATAATACATAATAATTATTAAATAAATTACATGTTGTAAAAATAATAAAATAG
AATAGAATGGCATTTGGGGCATTGATTGTATTTGGTAAGAATTCTCATGGTCAAATTGGT
ATTGAAATTGATAAAGAGTTTATTTATAATCAAGATAATTATACAGGTATACCAACTTTA
TTACCAAATTATTATAATGTTAAAAAGGTGTCATGTGGTGTGCAACATACAGGATTCATT
ACTGGAACAGGCAATTTATATATGTTTGGTAATGGTAGTTTTGGTAAATTGGGTACAGGC
GATACTGAAGATAGATCAGAGCCAACACTAGTGGAGATGAATCACTCAATTAGAGATTTA
CAATGCGGGAATGATCATTCAATAGCGTTGACTTCCTCATCGCAAGTTTTGACATGGGGC
AGTTCATCACTGGGCCGTTTGGGTCAANNNNNNNNNN